PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0962270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 284aa MW: 31935.7 Da PI: 9.2795 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6.2e-32 | 88 | 142 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eCl+NhAa+lG+h++DGCgEfmp+ ge+gt+++l CaAC+CHRnFHR+e + Lj4g3v0962270.1 88 IRYRECLRNHAARLGSHVTDGCGEFMPN-GEQGTPESLICAACECHRNFHRKEAQG 142 79*************************8.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-19 | 88 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.2E-29 | 88 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-28 | 89 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.327 | 90 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 206 | 281 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.98E-19 | 207 | 280 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.568 | 217 | 281 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 3.4E-27 | 219 | 276 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEMREMPSTL IYNLPNRDSS SPSLPSSSDQ PSQTHTIIFN HPPKLSHNHH HHIYTPSSTS 60 PPLPPNSVQL QQQPTRDPDP SSSSSLLIRY RECLRNHAAR LGSHVTDGCG EFMPNGEQGT 120 PESLICAACE CHRNFHRKEA QGEPQQVSNY HHNKSNGQNR IHPSSLHHKH GFSSSPGLMM 180 GFGGGSGGPA AESSSEDLNM FHQSNDGGQL SVQPPLSSKK RFRTKFTQQQ KDRMMEFAEK 240 LGWKIQKQDE EEVKQFCSHV GVKRQAFKVW MHNSKQAMKK KQIM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 218 | 277 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0962270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006401 | 0.0 | AP006401.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT18E13, TM0283, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027347073.1 | 1e-115 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 2e-67 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | V7CGK1 | 2e-98 | V7CGK1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156052.1 | 4e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 6e-55 | homeobox protein 24 |