PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0962260.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 354aa    MW: 39782.8 Da    PI: 9.6718
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0962260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.98.8e-3288142459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +rY+eCl+NhAa+lG+h++DGCgEfmp+ ge+gt+++l CaAC+CHRnFHR+e + 
  Lj4g3v0962260.1  88 IRYRECLRNHAARLGSHVTDGCGEFMPN-GEQGTPESLICAACECHRNFHRKEAQG 142
                      79*************************8.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-2988140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1988143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-2889139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.32790139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-28206281IPR009057Homeodomain-like
SuperFamilySSF466891.36E-18207280IPR009057Homeodomain-like
PROSITE profilePS500718.568217281IPR001356Homeobox domain
TIGRFAMsTIGR015654.8E-27219276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEMREMPSTL IYNLPNRDSS SPSLPSSSDQ PSQTHTIIFN HPPKLSHNHH HHIYTPSSTS  60
PPLPPNSVQL QQQPTRDPDP SSSSSLLIRY RECLRNHAAR LGSHVTDGCG EFMPNGEQGT  120
PESLICAACE CHRNFHRKEA QGEPQQVSNY HHNKSNGQNR IHPSSLHHKH GFSSSPGLMM  180
GFGGGSGGPA AESSSEDLNM FHQSNDGGQL SVQPPLSSKK RFRTKFTQQQ KDRMMEFAEK  240
LGWKIQKQDE EEVKQFCSHV GVKRQAFKVW MHNSKQAMKK KQIISLSCKS KLKKIGSPTH  300
PITQFCPLMG YRQMNYQTAS ALLGTSLSEV LIECGLPSRY NQKKQRLDKR DEHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202182771675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0962260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064010.0AP006401.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT18E13, TM0283, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347073.11e-114zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW72e-66ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLV7CGK12e-97V7CGK1_PHAVU; Uncharacterized protein
STRINGXP_007156052.13e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-52homeobox protein 24