PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0934570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 362aa    MW: 40747.9 Da    PI: 6.1792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0934570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS119.54.2e-371843162136
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e L+++A++++s++l+laqa+L+rl+++ +sp+g+p++R+a++f+ AL++ l++ ++      pp+ +s  + ++++ ++k+fs +sPi+ fs
  Lj4g3v0934570.1 184 IEELIRAADCFDSNQLQLAQAILERLNQRlRSPSGKPLHRAAFHFKDALQSLLSG-SN--RTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFS 274
                      679*************************99************************9.22..2335777777788********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                       +t+Nqa+lea++g+  +H++Df+i+ G+Q+++L+ ++a++ 
  Lj4g3v0934570.1 275 IFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLMTEIAEKX 316
                      ***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.702157362IPR005202Transcription factor GRAS
PfamPF035141.5E-34184316IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MRVPVSSSSS STQANTSKLA QNVILHTTPP NPNTINNNNQ NLCYEPKSVL DLCRSPSPEK  60
KTTAPKPEPD EQQHSIEEQL EDHVLPNLDW WDSIMKDLGL HDDSTTPLLK TNSDSSSLNS  120
NPCLPEIYPN QPFDQPQDFT SLSEIYSNQS LAYNFTNTTT PSPSLDPSIH DFNPQTHNNN  180
WDFIEELIRA ADCFDSNQLQ LAQAILERLN QRLRSPSGKP LHRAAFHFKD ALQSLLSGSN  240
RTNAPPRLSS MAEIVQSIRI FKAFSGISPI PMFSIFTTNQ ALLEALHGSL FMHVVDFEIG  300
LGIQYASLMT EIAEKXXXXX XXXXXXXXXX KGCFYGVRRS SRRWKLPEEG LRRGERRFTA  360
PG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0934570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0090703e-80AP009070.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT46B17, TM0802b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509243.11e-137scarecrow-like protein 15
SwissprotO232104e-62SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S2YSK71e-135A0A1S2YSK7_CICAR; scarecrow-like protein 15
STRINGXP_004509243.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.13e-64GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]