PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0934560.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 35183.6 Da PI: 5.496 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73.1 | 3.8e-23 | 248 | 310 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v+ L +eN++L++el +l++e++kl+se+ Lj4g3v0934560.4 248 ERELKRQKRKQSNRESARRSRLRKQAECEELQKRVEMLGNENQTLREELRKLSEECEKLTSEN 310 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.8E-30 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 6.2E-19 | 242 | 308 | No hit | No description |
PRINTS | PR00041 | 8.2E-5 | 247 | 263 | IPR001630 | cAMP response element binding (CREB) protein |
Pfam | PF00170 | 7.4E-21 | 248 | 310 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.3E-22 | 248 | 312 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.507 | 250 | 313 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-11 | 251 | 307 | No hit | No description |
CDD | cd14702 | 6.81E-23 | 253 | 303 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 255 | 270 | IPR004827 | Basic-leucine zipper domain |
PRINTS | PR00041 | 8.2E-5 | 265 | 285 | IPR001630 | cAMP response element binding (CREB) protein |
PRINTS | PR00041 | 8.2E-5 | 285 | 302 | IPR001630 | cAMP response element binding (CREB) protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGTGEESTAK PSKSSVSTQE IPTAPSYPDW SSSMQAYYAS GAAPPPYFAS TVASPTPHPY 60 MWGSQHPLMP PYGTPVPYPA LYPPGNIYAH PGIAVTPSPM QQSTEIEAKG TNGKDRDSSK 120 KLKGTSANTC AKAGESGKAG SGSGNDGNSH SAESGSDGSS SASDENTNQQ ESATNKKRSF 180 DQMLVDGANA QNNSAGAISQ SPVPGQPATN LNIGMDLWNA SSGAPGAVAT SAIMGREVVL 240 SEQWIQDERE LKRQKRKQSN RESARRSRLR KQAECEELQK RVEMLGNENQ TLREELRKLS 300 EECEKLTSEN SSIKEELDRL CGPETVANLG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 270 | RRSRLRK |
2 | 264 | 271 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.55 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0934560.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094189 | 0.0 | BT094189.1 Soybean clone JCVI-FLGm-24N9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346030.1 | 0.0 | G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 1e-109 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A371H2G6 | 0.0 | A0A371H2G6_MUCPR; G-box-binding factor 1 | ||||
STRING | GLYMA02G06550.2 | 1e-180 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 3e-85 | G-box binding factor 1 |