PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0934560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bZIP | ||||||||
Protein Properties | Length: 231aa MW: 24791 Da PI: 5.26 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73.9 | 2.3e-23 | 149 | 211 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v+ L +eN++L++el +l++e++kl+se+ Lj4g3v0934560.1 149 ERELKRQKRKQSNRESARRSRLRKQAECEELQKRVEMLGNENQTLREELRKLSEECEKLTSEN 211 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.6E-19 | 143 | 209 | No hit | No description |
PRINTS | PR00041 | 3.5E-5 | 148 | 164 | IPR001630 | cAMP response element binding (CREB) protein |
Pfam | PF00170 | 3.9E-21 | 149 | 211 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.3E-22 | 149 | 213 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.507 | 151 | 214 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.53E-11 | 152 | 208 | No hit | No description |
CDD | cd14702 | 3.01E-18 | 154 | 204 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 156 | 171 | IPR004827 | Basic-leucine zipper domain |
PRINTS | PR00041 | 3.5E-5 | 166 | 186 | IPR001630 | cAMP response element binding (CREB) protein |
PRINTS | PR00041 | 3.5E-5 | 186 | 203 | IPR001630 | cAMP response element binding (CREB) protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQQSTEIEAK GTNGKDRDSS KKLKGTSANT CAKAGESGKA GSGSGNDGNS HSAESGSDGS 60 SSASDENTNQ QESATNKKRS FDQMLVDGAN AQNNSAGAIS QSPVPGQPAT NLNIGMDLWN 120 ASSGAPGAVA TSAIMGREVV LSEQWIQDER ELKRQKRKQS NRESARRSRL RKQAECEELQ 180 KRVEMLGNEN QTLREELRKL SEECEKLTSE NSSIKEELDR LCGPETVANL G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | RRSRLRK |
2 | 165 | 172 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.55 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0934560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142555 | 0.0 | BT142555.1 Lotus japonicus clone JCVI-FLLj-16G5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346028.1 | 1e-126 | G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_027346029.1 | 1e-126 | G-box-binding factor 1-like isoform X1 | ||||
Refseq | XP_027346030.1 | 1e-126 | G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 6e-64 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A371H2G6 | 1e-121 | A0A371H2G6_MUCPR; G-box-binding factor 1 | ||||
STRING | XP_007156023.1 | 1e-116 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 2e-54 | G-box binding factor 1 |