PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0819990.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 342aa    MW: 37218.1 Da    PI: 10.164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0819990.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31271328359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh 
  Lj4g3v0819990.1 271 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAAMLVVTYEGEHNHA 328
                      99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-17221267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-32257328IPR003657WRKY domain
PROSITE profilePS5081130.435264330IPR003657WRKY domain
SuperFamilySSF1182903.01E-26266328IPR003657WRKY domain
SMARTSM007742.3E-37269329IPR003657WRKY domain
PfamPF031061.8E-26271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAVELMTGAY SFTSKSEDNA VQEAASGLES VEKLIRLLSQ TQKQFHHHHS SPSSSSAPHN  60
PNLTSIEIEN DCRAVADVAV SKFKRVISLL GRTRTGHARF RRAPLPLVPI NQVPKTEHLP  120
SEPRIFNAIP LQQIPPSTAT LHHHHHREPP EIGAATTATL ERKESSKTLN FSSYTSAPSS  180
FISSLTGDTD TKHHPSSSSP PPSGSFQITA GKPPLSSSSL KRKCSSETLG SGKCGSSSGR  240
CHCSKKSRKM RLKRVVRVPA ISLKMADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG  300
CPARKHVERA LDDAAMLVVT YEGEHNHALS AADATNLILE SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21257329273WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.256640.0cell culture| pod| protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0819990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1465310.0BT146531.1 Lotus japonicus clone JCVI-FLLj-13E9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457446.11e-149probable WRKY transcription factor 15 isoform X1
SwissprotO221768e-91WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLI3T1D30.0I3T1D3_LOTJA; Uncharacterized protein
STRINGGLYMA01G39600.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.16e-71WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]