PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj4g3v0805590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 118aa MW: 13405.2 Da PI: 10.2727 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.8 | 1.7e-20 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + Lj4g3v0805590.1 12 KGPWSPEEDEALQKLVERHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 37.3 | 6.4e-12 | 66 | 98 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++T+eEd+ +++a++++G++ W+tIar + gRt+ Lj4g3v0805590.1 66 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTD 98 79******************.*********.***7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.023 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-29 | 8 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-20 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 13 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-16 | 14 | 56 | No hit | No description |
PROSITE profile | PS50090 | 6.992 | 59 | 114 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.076 | 63 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-9 | 66 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.59E-7 | 66 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-13 | 72 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
MAMTRKEMDR IKGPWSPEED EALQKLVERH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTPE EDDTIIRAHA RFGNKWATIA RLLSGRTDPG RSSDPLAPGY REVLPGLT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-32 | 11 | 98 | 3 | 90 | C-Myb DNA-Binding Domain |
1msf_C | 7e-32 | 11 | 98 | 3 | 90 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.8241 | 1e-166 | cell culture| floral bud| flower| pod| protoplast| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj4g3v0805590.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027345753.1 | 4e-65 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 4e-57 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0L9TPG6 | 1e-63 | A0A0L9TPG6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R4V6 | 1e-63 | A0A0S3R4V6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155887.1 | 3e-64 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-60 | myb domain protein 70 |
Publications ? help Back to Top | |||
---|---|---|---|
|