PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj4g3v0620710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 187aa MW: 21646.6 Da PI: 9.6327 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.2 | 2e-21 | 21 | 106 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kf+ +Y+ +vGF vrk++++++ ++g+i + +fvC keg r+++k++ k+ + r+et+tgCka+l +k+ gk v+++ +eHnH l Lj4g3v0620710.1 21 KFWVDYGGKVGFGVRKQYTHHN-KSGSIATCRFVCCKEGLRKPDKRD-YKTINARPETKTGCKARLGLKNL-CGKLIVHDFIEEHNHIL 106 69***************99998.7788*****************999.99*******************99.9**************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-17 | 21 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MEEDWKPKVD MIFDSFEDAW KFWVDYGGKV GFGVRKQYTH HNKSGSIATC RFVCCKEGLR 60 KPDKRDYKTI NARPETKTGC KARLGLKNLC GKLIVHDFIE EHNHILHLQE TTHMLSSQRK 120 VSEVQCHQID VADDAGLQQR KTFDLMSKQV GGRTNLGYTR LDQKNYVRNR RQRSMVRGEA 180 GEGVKND |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj4g3v0620710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP009621 | 1e-144 | AP009621.1 Lotus japonicus genomic DNA, clone: LjT39G23, TM2115, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630666.1 | 2e-94 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024630798.1 | 2e-94 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024632861.1 | 2e-94 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024634855.1 | 2e-94 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024634870.1 | 2e-94 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A151RX65 | 1e-109 | A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | AES87711 | 4e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-24 | FAR1-related sequence 5 |