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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lj4g3v0620080.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 289aa MW: 32495.8 Da PI: 9.1574 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 40.1 | 6.6e-13 | 83 | 126 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
Er RR+++++ f++L llP + p K++K++i kAv YIk Lq
Lj4g3v0620080.1 83 TERERRKKMRNMFDTLHALLPRL---P-SKPDKSTIIDKAVSYIKTLQ 126
6*********************6...3.89*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 7.07E-17 | 74 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.03 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.4E-16 | 79 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.00E-13 | 80 | 130 | No hit | No description |
| SMART | SM00353 | 2.3E-10 | 83 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.2E-10 | 83 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 289 aa Download sequence Send to blast |
MALEGHDLNS GFLWKNRSWG SLPDFDDIGE SSDKLGMKPQ KKQGEGNGEE ALVNKKRNRG 60 GRREKNVVVD DGGKDDDEVH MWTERERRKK MRNMFDTLHA LLPRLPSKPD KSTIIDKAVS 120 YIKTLQQTLE KLEKQKKERL QPTVINSQWQ QSYDLREGFI LDMGSSNNLS SAMVGTGSSS 180 NPSISSNLAY VQPMGFQTWS YQNIVLNVIG FEAQFSISTA KKKSTLTTIA FVLEKYKIEV 240 ISANIVCNGN TNVYLIIAQA KQDSYLFQDA NSVAEIYKQA AGEIQLFIA |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lj4g3v0620080.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027348315.1 | 6e-86 | transcription factor bHLH95 | ||||
| TrEMBL | G7JK21 | 1e-83 | G7JK21_MEDTR; Helix loop helix DNA-binding domain protein | ||||
| STRING | AES90131 | 2e-84 | (Medicago truncatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4773 | 33 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G49770.1 | 5e-17 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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