PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0472820.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 171aa    MW: 19581.2 Da    PI: 4.9828
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0472820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP33.11.5e-1085107224
                      -SSTT-----TT--HHHHHTT-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvC 24 
                      Cqve+C+adlseak+yhrrhkv 
  Lj4g3v0472820.1  85 CQVENCDADLSEAKQYHRRHKVF 107
                      *********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
Gene3DG3DSA:4.10.1100.105.3E-1177116IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-983118IPR004333Transcription factor, SBP-box
PfamPF031104.5E-585106IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MLRAITNTLC FHALGTMSCG LVNDHQDGEA KMWYEGKRTL RYKEYDEEEE EEEEDEEEEG  60
RRKRVVTDLY SKRGSKGGSS VPPSCQVENC DADLSEAKQY HRRHKVFPRG FYPSKVLMRP  120
VLEDSMSYQN LMTLKGVVGG VWLGIMRGVA KMQLTIMDND FINEMGIEAS I
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0472820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159344.11e-33hypothetical protein PHAVU_002G230300g
TrEMBLV7CPQ32e-32V7CPQ3_PHAVU; Uncharacterized protein
STRINGXP_007159344.14e-33(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2269134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.18e-08squamosa promoter binding protein-like 14