PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0451130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HSF | ||||||||
Protein Properties | Length: 206aa MW: 24008.2 Da PI: 7.9029 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106 | 3e-33 | 32 | 127 | 2 | 102 |
HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y++le +e+ ++++sw+++g+ fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weF+h++F++g + Lj4g3v0451130.1 32 FLLKTYDLLEeggaEEDGSKIVSWNSEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFQHEKFQRGCR 116 9*********88877899**************************************************9998.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 ++l +i rkk Lj4g3v0451130.1 117 HMLVDITRKKC 127 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.8E-35 | 24 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.5E-41 | 28 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.66E-28 | 29 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-29 | 32 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-9 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-9 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAENMVELNL DLGSFFSRHA GQSPRPRCPA PFLLKTYDLL EEGGAEEDGS KIVSWNSEGT 60 GFVVWSPAEF SELTLPRYFK HNNFSSFIRQ LNTYGFKKTS SKRWEFQHEK FQRGCRHMLV 120 DITRKKCEPS VFPSYLKSSS EENATMTSNS TEESKDYHEL LMEENKNLKK ERLELQTQIA 180 ECKSLQMKLL DCLSQFMDKH QNKVRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-15 | 1 | 125 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-15 | 1 | 125 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-15 | 1 | 125 | 3 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and immature seeds. {ECO:0000269|PubMed:16202242}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0451130.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145411 | 0.0 | BT145411.1 Lotus japonicus clone JCVI-FLLj-13E6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516466.1 | 1e-114 | heat stress transcription factor B-2a | ||||
Refseq | XP_028238608.1 | 1e-114 | heat stress transcription factor B-2a-like | ||||
Swissprot | Q338B0 | 6e-36 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | I3SY63 | 1e-152 | I3SY63_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA01G34490.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-34 | heat shock factor 4 |
Publications ? help Back to Top | |||
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