PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0450340.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 318aa    MW: 35644.7 Da    PI: 8.0908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0450340.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.15.9e-39610332128
              NAM  32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmh 124
                       +i+evd+yk++Pw+Lp+k+  +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ ++++vg+kk Lvfy g+ pkg+kt+W+mh
  Lj4g3v0450340.1   6 AIIAEVDLYKFDPWELPSKAVFGQQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSdGHQKVGVKKALVFYGGKPPKGVKTNWIMH 99 
                      579**************7777899**************************************9967788************************* PP

              NAM 125 eyrl 128
                      eyrl
  Lj4g3v0450340.1 100 EYRL 103
                      **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.6841147IPR003441NAC domain
SuperFamilySSF1019416.15E-472147IPR003441NAC domain
PfamPF023651.7E-1522103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPLPVAIIAE VDLYKFDPWE LPSKAVFGQQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT  60
GTDKPILSSD GHQKVGVKKA LVFYGGKPPK GVKTNWIMHE YRLVDKSFGP SFRTTTTHPP  120
VPAHPSNCNK KNSLRLDDWV LCRIYKKSNG TTTMPRPPLM ENDKELNSLE TMVPTMSTLS  180
MLNTNQNTTP PSSRTYEPEG LVENHDNFFH GYLTPDQSMQ NGNNNDTNDD NSFCVKRAIA  240
PSQFLNESGS AGSSFSTKRF HGDLNSGSSN TEENNNNSFV SLLSQLPQSA SFHANAILES  300
VEDGVMRQQF QLPNINWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-59514946167NO APICAL MERISTEM PROTEIN
1ut4_B6e-59514946167NO APICAL MERISTEM PROTEIN
1ut7_A6e-59514946167NO APICAL MERISTEM PROTEIN
1ut7_B6e-59514946167NO APICAL MERISTEM PROTEIN
3swm_A7e-59514949170NAC domain-containing protein 19
3swm_B7e-59514949170NAC domain-containing protein 19
3swm_C7e-59514949170NAC domain-containing protein 19
3swm_D7e-59514949170NAC domain-containing protein 19
3swp_A7e-59514949170NAC domain-containing protein 19
3swp_B7e-59514949170NAC domain-containing protein 19
3swp_C7e-59514949170NAC domain-containing protein 19
3swp_D7e-59514949170NAC domain-containing protein 19
4dul_A6e-59514946167NAC domain-containing protein 19
4dul_B6e-59514946167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.88311e-125floral bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0450340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-75AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346666.11e-151NAC transcription factor 25-like
SwissprotQ8GY421e-90NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0L9TLQ41e-144A0A0L9TLQ4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZL41e-144A0A0S3QZL4_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UM141e-144A0A1S3UM14_VIGRR; NAC transcription factor 25
STRINGGLYMA07G31220.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-85NAC domain containing protein 25