PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0341140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CAMTA
Protein Properties Length: 980aa    MW: 110284 Da    PI: 5.5228
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0341140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.12.6e-56221364118
             CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                       ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG+sw+kkkdgktv+E+hekLKvg+v++l+cyYah+ee ++fqrr
  Lj4g3v0341140.1  22 AQHRWLRPAEICEILRNYRLFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEESENFQRR 115
                      49******************************************************************************************** PP

             CG-1  98 cywlLeeelekivlvhylevk 118
                      +yw+Le+++ +iv+vhyl+vk
  Lj4g3v0341140.1 116 SYWMLEQDMMHIVFVHYLDVK 136
                      ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.6115141IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-8018136IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.9E-5468558IPR013783Immunoglobulin-like fold
PfamPF018332.4E-5472551IPR002909IPT domain
SuperFamilySSF812966.53E-16472557IPR014756Immunoglobulin E-set
SuperFamilySSF484031.06E-16650761IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-17659763IPR020683Ankyrin repeat-containing domain
CDDcd002042.66E-14667799No hitNo description
SMARTSM002481500668697IPR002110Ankyrin repeat
PROSITE profilePS5029717.582668762IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-7673761IPR020683Ankyrin repeat-containing domain
SMARTSM002480.022701730IPR002110Ankyrin repeat
PROSITE profilePS5008810.152701733IPR002110Ankyrin repeat
SMARTSM000156.3881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.059882911IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.23E-6883926IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.032884902IPR000048IQ motif, EF-hand binding site
SMARTSM000150.29904926IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.066905929IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-4907926IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MAENASCRLN PQLDFQKLQF EAQHRWLRPA EICEILRNYR LFQITSEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHSWRKKKD GKTVKEAHEK LKVGSVDALH CYYAHGEESE NFQRRSYWML  120
EQDMMHIVFV HYLDVKVNKT NIGASTDSDG TRSYSHRGRS VSSGFPTNYS SLPSGSTDSM  180
SPTSTLTSLC EDADSEDIHQ TSSGLHFFRK SQNMENGQLI DKIDAHSNIS YLTHPFSGDH  240
GQFGQDYIPL VKGDKSRPSD NNYIEGQRAH GMASWDNVME QSAGMHIDPS MVSVTSIPSS  300
SMGNIVEQEH AALTGEAEAS QSFQSNWQIP FEDNTGELPK WNFTQSLSVE FEPDTGLLGN  360
ETNNASPRNV PDLFNFDCDP NEQSVQQSFS KQHTYAGVFG EGCISYPLST KHALLGEDES  420
LKKVDSFSRW IIKELAAVDD MQMQSRNADE CGNVINDTSF DLSRSKDQLF SIHDFSPKWA  480
YPESEIEVFI IGTFLTTQPE VATCNWSCMF GEVEVPAEVL ANGILCCQSP PHETGRVPFY  540
ITCSDRLACS EVMEFEFKEG FSENVEVDFF NKMQLHLRLE ELLSLKSVEP SNEAFEDDFQ  600
KRNLIYKLIS LKEEEEYSSK EEQTVDMDIS KHKLKAHMTQ SLVKEKLYSW LLRKVTETGK  660
GPSVLGEDGQ GVLHLVAALG YHWAIKPIVT AGVNINFRDV NGWTALHWAA SCGREQTVAV  720
LVSMGAAAGA LTDPSPAFPS GRTAADLASS NSHKGISGFL AESLLTSHLE SLTVADPNED  780
FQKETPGMKA VQTVSERIAT PVLHGELPDT LCLKDSLDAV RNATQAADRI HQVFRMQSFQ  840
RKQLAQYIEE YEDDDELGLS EQQAISLLAS ETCKYGQGKG LANAAALQIQ KKFRGWTKRK  900
EFLFIRQRIV KIQAHVRGHQ ARKKHKPDLL WSVGILEKVV LRWRRKGHGL RGFRPDAPNE  960
LQEQPGPSNS EEDDYDFLKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A2e-13472562993calmodulin binding transcription activator 1
2cxk_B2e-13472562993calmodulin binding transcription activator 1
2cxk_C2e-13472562993calmodulin binding transcription activator 1
2cxk_D2e-13472562993calmodulin binding transcription activator 1
2cxk_E2e-13472562993calmodulin binding transcription activator 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.26210.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0341140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073040.0AP007304.2 Lotus japonicus genomic DNA, chromosome 4, clone: LjB10F10, BM1099, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504800.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S2YI430.0A0A1S2YI43_CICAR; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_004504800.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]