PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0335840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bZIP | ||||||||
Protein Properties | Length: 196aa MW: 21888 Da PI: 9.5246 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.3 | 4e-14 | 115 | 169 | 2 | 55 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkke 55 + l+++rr++kNRe+A rsR+RK+a++ eLe v++Le+eN +L +e +e+ ++ Lj4g3v0335840.1 115 ATLQKQRRMIKNRESAARSRERKQAYTTELEAIVQQLEEENARLMEEeAERNRQR 169 5799***************************************986414444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-9 | 114 | 178 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-12 | 115 | 172 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.013 | 116 | 168 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.69E-10 | 118 | 168 | No hit | No description |
CDD | cd14707 | 1.71E-16 | 118 | 164 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-13 | 119 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 121 | 136 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDDLLKSIYT PSKDIKPPTS LDDVWRDIVA AGTTAIAAEE MTLEDFLTKT GAVREEDVRG 60 LLPPPPPPPP SHFHLPPPPP SASDASSSLV TPNGVSAASV AKGKRRAIEE PVDKATLQKQ 120 RRMIKNRESA ARSRERKQAY TTELEAIVQQ LEEENARLME EEAERNRQRL KQLRECLIPI 180 VEKPKPKRKL QRSNSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0335840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010417 | 0.0 | AP010417.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05L17, TM0337b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346522.1 | 9e-68 | G-box-binding factor 4-like isoform X1 | ||||
TrEMBL | A0A1S3T8G2 | 1e-64 | A0A1S3T8G2_VIGRR; protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 | ||||
STRING | GLYMA08G08220.1 | 1e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 4e-27 | G-box binding factor 4 |