PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0335770.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22196 Da PI: 8.8044 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 76.7 | 2.8e-24 | 146 | 197 | 1 | 51 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++t Lj4g3v0335770.2 146 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITT 197 58***************************99***************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-26 | 131 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-22 | 139 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.169 | 141 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-24 | 146 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-21 | 147 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MKDYYDLQMK FSIIQENNKR KDPQFSLSLQ DNATATSEEG PSRILEIFSK NIQRSPSLPN 60 NSANDDSMDE NELGLSLRLQ TSTSQKETEE NKEEKREQLV ASFASPPVQN NKLQRTHDLP 120 GITAHAAAAN RKARVSVRAR CEAATMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV 180 RKQVQRCIDD MSILITT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-18 | 133 | 197 | 1 | 64 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0335770.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010417 | 0.0 | AP010417.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT05L17, TM0337b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348425.1 | 1e-104 | probable WRKY transcription factor 9 | ||||
TrEMBL | A0A371GKQ9 | 1e-104 | A0A371GKQ9_MUCPR; Putative WRKY transcription factor 9 (Fragment) | ||||
STRING | XP_007159029.1 | 4e-99 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-39 | WRKY DNA-binding protein 9 |