PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0216600.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 280aa    MW: 31777.4 Da    PI: 6.2482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0216600.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11164189126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ + G+C yGd+CkF+H+
  Lj4g3v0216600.3 164 YQPDICKDYKEAGYCGYGDSCKFMHD 189
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-9162195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878163191IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-11164194IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9164189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.9E-11230279IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.99E-10243278No hitNo description
CDDcd001621.28E-5244278No hitNo description
PfamPF000971.5E-4244278IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS500899.155244278IPR001841Zinc finger, RING-type
PROSITE patternPS005180259268IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDDSDQFAKS EQVCSSFFRK PVNKMNIRKR TIDHGENDDD DESPKPYACA EPIEEESGKQ  60
PVFQFESSKE IQLQHDSKAT ATLETETEFS KDARAVRERA LKQAAKRSNS LKGDGKLLYK  120
GMNGYKDYKA GFRREQTIAS EKAGGAHGPL RASAHIRVSA RFDYQPDICK DYKEAGYCGY  180
GDSCKFMHDR GDYKFGWQLE KEWDEAEKAR KMRLLAAASG EDADEEGANV TSDEDDDDSL  240
PFVCFICNKP FVDPVVTKCK HYFCEHCALK HHAKNKKCFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-5276280113298RING finger protein 113A
5z58_M3e-5276280113298RING finger protein 113A
6ff4_t3e-5276280113298RING finger protein 113A
6ff7_t3e-5276280113298RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0216600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230309.11e-151zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG61e-120C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A151SCN71e-150A0A151SCN7_CAJCA; Zinc finger CCCH domain-containing protein 1
STRINGXP_007134882.11e-148(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.21e-122C3H family protein