PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0190020.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 288aa MW: 30656.7 Da PI: 6.4059

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0190020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	92	4.8e-29	2	54	2	54
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54 +e+++kcprC+s +t+fCy+nn+s sqPry+Ck+C+r Wt GGalr++P+Gg Lj4g3v0190020.1 2 EEQQMKCPRCKSLDTRFCYFNNHSRSQPRYYCKECKRRWTLGGALRDIPIGGV 54 5799***********************************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-17	3	53	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-28	4	54	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.636	6	60	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	8	44	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEEQQMKCPR CKSLDTRFCY FNNHSRSQPR YYCKECKRRW TLGGALRDIP IGGVAGSRPC 60 SGGGLGARYL SATVVEVQSL NASSQAPFNQ SLNGGGINVG ASTISSSTST LVEPLQSLVQ 120 NQLVSPSIPI TNTYHYGSVG GGAHAVYLSS FVGVQSLNHD NVNVVGSNPT TNTRSSSILT 180 LPQSLVQNQI ISPSLPITST YDHSSVGGEA QSMADNNDIG AADVASHYPD HWSQSFINTD 240 NNVATSNVVS WDDMFNITSN ISGGNSDMNF SMPNHGHGLP GYDAPPSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0190020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	3e-23	Dof family protein