PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0166390.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 699aa    MW: 77726.5 Da    PI: 5.4446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0166390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07122144427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C ff++ G C  GdrC F Hgp
  Lj4g3v0166390.1 122 VPCIFFQK-GLCLKGDRCAFLHGP 144
                      69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6062554IPR000571Zinc finger, CCCH-type
PfamPF156634.8E-122680No hitNo description
SMARTSM003560.0022653IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2725682IPR000571Zinc finger, CCCH-type
SMARTSM003560.0115881IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436118145IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5118144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5119143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5122144IPR000571Zinc finger, CCCH-type
PfamPF146080.023123143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MVAQQPQLQI QPPQPAPPSA QDEALKRNTD CVYFLASPLT CKKGNECEYR HSEYARVNPR  60
DCYYWLNGNC LNPKCSFRHP PLDGLIGTPT AAAAAGGPSV PPPQIATAAA THAPYNSAKQ  120
AVPCIFFQKG LCLKGDRCAF LHGPNPTTSS KVATQGPMAS QGFENPSLKK PFGGIEKYTQ  180
ERKSSQGNFS SSVGGFEAKP AQKAETARFH LEKHVPPPPA GFDNEASRFK ITSSPPPMTN  240
GPTVARSNRV HQARLPDDHS FHSGKDSDEF LRESSPGFDV LVADELRNSD YYHGEDEFGK  300
GRGQDDRNLD SLNEYDIGHS ADYSLAADVD RERYRVPHAY DSYDHTQEPY AWEQRRKAPA  360
HVERRTQRRS GSPENVEVSD LRHRLSKRRK VNGLKSVVTN DYAPGSHGEE QSHRFFSQKD  420
SQSSISSRFR GRIKLPANGA DSHLERDSDR GINRGRLSSG RLHAPHQGRI QDRIRGSSQD  480
DERRNFRGRE LMGNRSDFAA PKSLSELKVG RNTESKEQHS LGKRKSFMDH QQSDDDIPFE  540
GPKPLSEILK EKRGVGATSH GGKSSDDKNR EIASSSDHTS VENTQNGSLP VKSHLLVNEE  600
DSTTQVTDAI GRDSDNVDVT HGQSPEDGMI YDEAAEDQEY EGDDDQREGD YDYDQVDEEG  660
EYEYEQVDEG ENQEQEYMDD EEGDGDGDDF AKKIGVVIT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.226480.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0166390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342375.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2Z6MJZ20.0A0A2Z6MJZ2_TRISU; Uncharacterized protein
STRINGXP_004504622.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137