PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0120440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 151aa MW: 17362.9 Da PI: 10.2523 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.6 | 1.8e-22 | 13 | 104 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y++ GF vrk++ ++ +g +++r++vCskeg r+++ + ++ r +++ tr++C a+++v+ e+ +gkw+vt +e+ HnHel+p Lj4g3v0120440.1 13 KFYERYGQCFGFGVRKDNVYRG-PKGCVVTRQLVCSKEGARHKKYMErGDRVRAPKPITRVSCPARFRVRYERnSGKWKVTLFEKSHNHELTP 104 6*******************98.77779**************9998845677889****************999****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-20 | 13 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGLEFDSEEE AVKFYERYGQ CFGFGVRKDN VYRGPKGCVV TRQLVCSKEG ARHKKYMERG 60 DRVRAPKPIT RVSCPARFRV RYERNSGKWK VTLFEKSHNH ELTPVDKVHL ISSFRQISES 120 DKAQINSLKI HGVRTCNIMG LMLGQKGGHE S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0120440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126074.1 | 3e-47 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A484MMQ9 | 5e-45 | A0A484MMQ9_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-28 | FAR1-related sequence 5 |