PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0119780.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 481aa    MW: 53453 Da    PI: 5.042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0119780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.53.2e-1081704801312
             GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      l+++L+ cA+avs++d   a+  + + l +++s +gdp qRl ay++e+L+arl  s+s +ykal++++ +    +e +++++++++++P+ kf
  Lj4g3v0119780.1 170 LKQVLILCAQAVSDEDIPTARGWIDNiLGKMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQPT---GKELMSYMHILYQICPYWKF 260
                      5799*****************9997626788***************************************9...99****************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +++ aN aI ea+++e+r+HiiDf+i qG+QW  L+qaLa Rp+gpp +RiTgv++++s+  +   le +gerL++fA++ gvpfef+  +a +
  Lj4g3v0119780.1 261 AYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRITGVDDSQSFhaRGGGLEIVGERLSDFARSYGVPFEFHS-AAMS 353
                      ********************************************************9999889999***********************.8999 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        ++e e+L v+pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv+++eqe+++n+++F++rf+e+leyy+a+f+s+++  pr++
  Lj4g3v0119780.1 354 GCEVERENLGVRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFMETLEYYTAMFESIDVACPRDD 447
                      9********************************************************************************************* PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetl 312
                      ++ri+ E+++++r+ivn+vacegaer+erhe +
  Lj4g3v0119780.1 448 KKRISAEQHCVARDIVNMVACEGAERVERHELF 480
                      ******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.541144481IPR005202Transcription factor GRAS
PfamPF035141.1E-105170480IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MQTSQKYPSS AGVHFYQQPL QGIYQISQSD RCDSSSQGTN ISFEACKEQF FTLESCPEIT  60
GFMNCDSPSY GSVSSNRSPL SPQDSQSSHS DHHRSPENTY GSPISSLSSV DDGNELKHKL  120
RELEISLLGL DESDIVDSCD NWGSSLRGAP PPSAKYDWNL IAENIPKLDL KQVLILCAQA  180
VSDEDIPTAR GWIDNILGKM VSVAGDPSQR LGAYLLEGLR ARLELSGSLI YKALKCEQPT  240
GKELMSYMHI LYQICPYWKF AYISANAAIA EAMANESRIH IIDFQIAQGT QWHLLIQALA  300
HRPGGPPFIR ITGVDDSQSF HARGGGLEIV GERLSDFARS YGVPFEFHSA AMSGCEVERE  360
NLGVRPGEAL AVNFPYVLHH MPDESVSTEN HRDRLLRLVK SLSPKVVTLA EQESNTNTSP  420
FFNRFMETLE YYTAMFESID VACPRDDKKR ISAEQHCVAR DIVNMVACEG AERVERHELF  480
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-5220447636307GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.60820.0floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}.
UniprotTISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0119780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104080.0AP010408.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31P09, TM1330, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226109.10.0scarecrow-like protein 13
RefseqXP_029129049.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A151SU720.0A0A151SU72_CAJCA; Scarecrow-like transcription factor PAT1
STRINGGLYMA17G01150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13