PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0119630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 125aa MW: 14301.7 Da PI: 4.6186 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.3 | 9.3e-12 | 67 | 115 | 1 | 50 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 +fY++YA+ GF rk+ ++ r+g+i++r++vC++eg+r+e++ ++++ Lj4g3v0119630.1 67 EFYQHYAHFKGFGARKDDVRRD-RKGNIISRQLVCNREGERHEKHLNKVS 115 6*****************9998.7777****************9988333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-9 | 67 | 114 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MADVNEYFSI DLSNDGGMSE DDDSVAVADD GNGNNENSNP DRCKLIPDLT ADEIRELVFC 60 SEKDAVEFYQ HYAHFKGFGA RKDDVRRDRK GNIISRQLVC NREGERHEKH LNKVSETTRL 120 VLIYF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0119630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010408 | 0.0 | AP010408.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31P09, TM1330, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025656959.1 | 4e-16 | uncharacterized protein LOC112751850 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-08 | FAR1 family protein |