PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0070880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 681aa    MW: 78077.1 Da    PI: 6.8818
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0070880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.5e-2174157189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      ++Y  YAkevGF vr+++s  +++++e + + ++Cs +g++++++ +     + r+etrtgC a+++++  ++++w+++++ leHnH l
  Lj4g3v0070880.1  74 NYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRTKDVN-----HLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNHIL 157
                      5899**************************************99988.....999********************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1974157IPR004330FAR1 DNA binding domain
PfamPF105511.3E-29276369IPR018289MULE transposase domain
PfamPF044341.8E-4551595IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.606563599IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-6574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MVKLGSIQQT TFGEMEETSL CCEDLPHGEC IEVHKDEDAA LIELDSQNGF SEGRKEFDAP  60
AVGMEFESYD DAYNYYICYA KEVGFCVRVK NSWFKRNSRE KYGAVLCCSS QGFKRTKDVN  120
HLRKETRTGC PAMMRIRIAE SQRWRIIEVI LEHNHILGAK IHKSAKKMGN GTKRKSLPSS  180
DSEVQTVKLY RPLVIDAGGN GNLNPSARDD RTFSEMSNKL NVKRGDTQAI YNFLCRMQLT  240
NPNFFYLMDF DDEGHLRNAF WADARSRAAC GYFGDVIYFD NTYLSSKYEI PLVVFVGINH  300
HGQSVLLGCG LLAGETTESY IWLFRTWVTC MSGCSPQTII TDRCEALQSA IIEVFPKSHH  360
CFGLSLIMKK VPEKLGGLHN YDGIRKALIK AVYETLKISE FEAAWGIMIQ RFGVSDHEWL  420
RSLYEDRVRW APVFLKDVFF GGMSAARPGE SIGPFFGRYV HKQTPLKEFL DKYELALHKK  480
HKEESLADTE SRNSSPVLKT RCSLELQLSR MYTREIFMKF QFEVEEMFSC FGTTQLHVDG  540
PIVIYLVKER VLIDGNRREI KDFEVVYSRA AGELRCICSC FNFYGYLCRH ALCVLNFNGV  600
EEIPFKYILS RWKKDYKRLH VPDHSSVSAD DTDPIQWSNQ LFSSALQVVE EGTISLDHYN  660
VALQACEESL SKVHDVDQRQ D
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0070880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049080.0AP004908.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT12N11, TM0066, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029128340.10.0protein FAR1-RELATED SEQUENCE 6, partial
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A151T6B60.0A0A151T6B6_CAJCA; Protein FAR1-RELATED SEQUENCE 6
STRINGGLYMA15G13150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]