PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0015460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 312aa    MW: 34492.6 Da    PI: 7.8583
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0015460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer67.32.8e-211001382059
      ZF-HD_dimer  20 havDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve 
  Lj4g3v0015460.1 100 YATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEG 138
                      79*********9.999*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152314.48587135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.2E-19100136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-20101136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-16101139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-30231301IPR009057Homeodomain-like
SuperFamilySSF466895.73E-19231300IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-27239295IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEVSSSQEAG EIPIPIPIPI PINSSTNYGG GHAAGNGHDH HMNMHHIHDP APHHNHNHNN  60
IISPTSAAVP SNGSSMQLQA AAGLQQEDDG AYNKKVAIRY ATDGCGEFMP SGEEGTIEAL  120
NCSACNCHRN FHRKEVEGEP PDYQHFNRLG LGGRKFILGG HHHHHHKNIL TTPEALGYHH  180
HPTTAGNNNI LPSRTILPPH HMIMPYNIGS LLPSESDEQE DVAAGGMVGR PAGQNQIVKK  240
RFRTKFTQEQ KEKMLNFADK VGWKIQKQEE SAVQQFCQEI GVKRRVLKVW MHNNKHNLAK  300
KNNLPTTPSQ PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242402971875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0015460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028762854.11e-101zinc-finger homeodomain protein 3-like
RefseqXP_028762855.11e-101zinc-finger homeodomain protein 3-like
TrEMBLA0A151SB963e-99A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA07G40190.13e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-52homeobox protein 31