PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0015460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 312aa MW: 34492.6 Da PI: 7.8583 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 67.3 | 2.8e-21 | 100 | 138 | 20 | 59 |
ZF-HD_dimer 20 havDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve Lj4g3v0015460.1 100 YATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEG 138 79*********9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 14.485 | 87 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.2E-19 | 100 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-20 | 101 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-16 | 101 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-30 | 231 | 301 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-19 | 231 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.2E-27 | 239 | 295 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEVSSSQEAG EIPIPIPIPI PINSSTNYGG GHAAGNGHDH HMNMHHIHDP APHHNHNHNN 60 IISPTSAAVP SNGSSMQLQA AAGLQQEDDG AYNKKVAIRY ATDGCGEFMP SGEEGTIEAL 120 NCSACNCHRN FHRKEVEGEP PDYQHFNRLG LGGRKFILGG HHHHHHKNIL TTPEALGYHH 180 HPTTAGNNNI LPSRTILPPH HMIMPYNIGS LLPSESDEQE DVAAGGMVGR PAGQNQIVKK 240 RFRTKFTQEQ KEKMLNFADK VGWKIQKQEE SAVQQFCQEI GVKRRVLKVW MHNNKHNLAK 300 KNNLPTTPSQ PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 240 | 297 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0015460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028762854.1 | 1e-101 | zinc-finger homeodomain protein 3-like | ||||
Refseq | XP_028762855.1 | 1e-101 | zinc-finger homeodomain protein 3-like | ||||
TrEMBL | A0A151SB96 | 3e-99 | A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
STRING | GLYMA07G40190.1 | 3e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-52 | homeobox protein 31 |