PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3752130.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 41812.6 Da PI: 7.178 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.5 | 1.2e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk Lj3g3v3752130.2 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKC 100 69****************************.99**************964444222455*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + ++g++ktLvfykgrap+g+ktdW+mheyrle Lj3g3v3752130.2 101 IRN-SYMKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 137 **9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-60 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.946 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MASSNGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMDVI REVDLNKMEP WDLQERCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYMKIGM RKTLVFYKGR 120 APHGQKTDWI MHEYRLEDAN DPEGNTNEDG WVVCRVFKKK NLFKIGNNEG SSAHNSEQPI 180 NNSSGANARS FMHRDNQYLL LQQQNTRNPS GFELDKPELG LHHYPHLQNQ PQYALFQSQQ 240 PLLQSHKPMV YNDYSYASSL PSDPPLKQLM TNPRDCESGS DGLRYQVSES GMEVGSCEPP 300 QEMGGGRGEG MNEWGVLDRL VTSHLGNEDS TKEVRFDDAN PQSVHQINQL SLRGEMDFWG 360 YAKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3752130.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 8e-81 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356409.1 | 0.0 | protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-154 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0L9V9I3 | 0.0 | A0A0L9V9I3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SEU2 | 0.0 | A0A0S3SEU2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G00540.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-152 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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