PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3737660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 47aa    MW: 5462.64 Da    PI: 11.5675
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3737660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.8e-201047239
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     rien   rqvtf+kRr+ +lKKA+ELSvLCdae+ +++
  Lj3g3v3737660.1 10 RIENPVHRQVTFCKRRARLLKKAKELSVLCDAEIGLVM 47
                     8*********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-17147IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-20147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.292147IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-191047IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-213847IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 47 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRARLLK KAKELSVLCD AEIGLVM
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in a punctate pattern from the globular stage to the torpedo stage. {ECO:0000269|PubMed:11855641}.
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). In root meristem, expressed in external cells of columella, lateral root cap and atrichoblasts. In mature root, expressed in the central cylinder (PubMed:11855641). Expressed in leaf vasculature, young floral meristems and nectaries (PubMed:18203871). {ECO:0000269|PubMed:11855641, ECO:0000269|PubMed:18203871, ECO:0000269|PubMed:7549482}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3737660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368205e-65BT136820.1 Lotus japonicus clone JCVI-FLLj-11I9 unknown mRNA.
GenBankBT1435095e-65BT143509.1 Lotus japonicus clone JCVI-FLLj-2J17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455350.12e-24agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ388415e-23AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A072UI384e-23A0A072UI38_MEDTR; MADS-box transcription factor
TrEMBLA0A072UJ045e-23A0A072UJ04_MEDTR; MADS-box transcription factor
STRINGXP_004514527.14e-23(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-18AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]