PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3639790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRF | ||||||||
Protein Properties | Length: 331aa MW: 36931.8 Da PI: 8.2982 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 6.7e-25 | 87 | 131 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Lj3g3v3639790.1 87 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 131 79****************************************986 PP | |||||||
2 | QLQ | 63.9 | 4.1e-22 | 25 | 61 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk Lj3g3v3639790.1 25 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQK 61 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-12 | 25 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.9E-16 | 26 | 60 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.395 | 26 | 61 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 87 | 131 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-21 | 88 | 130 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MNSSGGSSSG TMMMGFSNSS SYNRSPFTVS QWQELEHQAL IFKYMVAGLP VPPDLVLPIQ 60 KSFDSISHTF FQHPSLSYCS FYGKKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR 120 GRNRSRKPVE SQTMTQSPSA VTSLTVTGGN SRTGIFQNLP TDAFRNLQGT GSGTDRADYH 180 LDSIPYGIPS KEYRYLQGLK SDGGERSLFS EASGSSKVLQ MESQLENAWP LMSTRVASFS 240 TSKSSNNSML QSYYPQHSFL SSEYPSGEAV KEEGQPLRPF FNEWPKSRES WSGLEDERSN 300 QTAFSTTQLS MSIPMSSSDF SATSSQSPHD N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3639790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007572 | 0.0 | AP007572.2 Lotus japonicus genomic DNA, chromosome 3, clone: LjT30G11, TM0757, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356226.1 | 0.0 | growth-regulating factor 4-like | ||||
Swissprot | Q6AWY4 | 4e-85 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | A0A371GUB3 | 0.0 | A0A371GUB3_MUCPR; Growth-regulating factor 5 (Fragment) | ||||
STRING | GLYMA12G01730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-46 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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