PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3639790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRF
Protein Properties Length: 331aa    MW: 36931.8 Da    PI: 8.2982
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3639790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.7e-2587131145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Lj3g3v3639790.1  87 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 131
                      79****************************************986 PP

2QLQ63.94.1e-222561137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Lj3g3v3639790.1 25 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQK 61
                     89*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-122561IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-162660IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.3952661IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76287131IPR014977WRC domain
PfamPF088793.0E-2188130IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNSSGGSSSG TMMMGFSNSS SYNRSPFTVS QWQELEHQAL IFKYMVAGLP VPPDLVLPIQ  60
KSFDSISHTF FQHPSLSYCS FYGKKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR  120
GRNRSRKPVE SQTMTQSPSA VTSLTVTGGN SRTGIFQNLP TDAFRNLQGT GSGTDRADYH  180
LDSIPYGIPS KEYRYLQGLK SDGGERSLFS EASGSSKVLQ MESQLENAWP LMSTRVASFS  240
TSKSSNNSML QSYYPQHSFL SSEYPSGEAV KEEGQPLRPF FNEWPKSRES WSGLEDERSN  300
QTAFSTTQLS MSIPMSSSDF SATSSQSPHD N
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3639790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0075720.0AP007572.2 Lotus japonicus genomic DNA, chromosome 3, clone: LjT30G11, TM0757, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356226.10.0growth-regulating factor 4-like
SwissprotQ6AWY44e-85GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A371GUB30.0A0A371GUB3_MUCPR; Growth-regulating factor 5 (Fragment)
STRINGGLYMA12G01730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-46growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]