PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3639420.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 338aa    MW: 37126.8 Da    PI: 8.2852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3639420.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-10323425
                     ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                       Cr+f+r G C+yG+rCkF H
  Lj3g3v3639420.1  3 DVCRNFQR-GSCQYGERCKFLH 23
                     68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-4125IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-8329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRDVCRNFQR GSCQYGERCK FLHAVQTQRK PNHSYQHQNT NNPFGFGSKS ASASASQQRT  60
NPFGFGSQNS SYSNAPSHSD FKPNQFKPFE NKWSRSSSQP QTGASRQSDN NSQSVNHKCT  120
DPEICKRQIA EDFENEKPLW ILTCYTHSRG APCDIVGDIS YEELRAAAYE DAKKGMSLQS  180
IVEKERNILK SKLIEFEKLR SEPYNIPLDL SLDIQNHQSN VAHANPFSPT TQNSGPLSVS  240
SFSQLGASLN AGFERTSAPQ MNTLAQPNSF GSGGNFLTSN TPNLFGSSIS GVQSSPFSAP  300
AQVTMFPGSM SQPQQSPVAF NGSSSTTMFQ TTSDVQLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3639420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103571e-124AP010357.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT05L20, TM1821, complete sequence.
GenBankAP0103581e-124AP010358.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT38M18, TM1917, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355923.11e-167zinc finger CCCH domain-containing protein 46 isoform X1
RefseqXP_027355924.11e-168zinc finger CCCH domain-containing protein 46 isoform X2
TrEMBLA0A1S2YJL41e-164A0A1S2YJL4_CICAR; zinc finger CCCH domain-containing protein 16
STRINGXP_004505582.11e-164(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-64C3H family protein