PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v3440330.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 283aa MW: 30221.5 Da PI: 6.415

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v3440330.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.6	1.3e-08	106	149	8	51
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r + N+eA r++R++Kka+ + Le++v +L a N+ L +l+ Lj3g3v3440330.3 106 KRPIGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMRKLQG 149 78889*********************************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-9	99	166	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.6E-11	104	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-13	104	167	No hit	No description
SuperFamily	SSF57959	1.31E-6	106	148	No hit	No description
CDD	cd14686	3.63E-11	107	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEDGELDFSN HEVFSSPNIG GEIPSSGSMD SFFDELLKDT HGCTHTHTCN PPGPDFSHTH 60 TCYHVHTKIV PVTSEDQVNN TDDTAESAEN GNGDNSGSSG KKGSKKRPIG NKEAVRKYRE 120 KKKARAASLE DEVVKLRALN QHLMRKLQGQ AVLEAEVARL KCLLVDIRGR IEGEIGSFPY 180 QKSNNSNMAG VNMAGSYVMN PCNLQCEDRV YCLQSEDGRI AEGGASLNGD GFGGCEFEGI 240 QCLAGQNLGL KDLRGCGGGQ AVSNVNSAPS NKRKGGSRAA TAG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.21132	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v3440330.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027354369.1	1e-160	basic leucine zipper 23-like isoform X1
Refseq	XP_027354372.1	1e-160	basic leucine zipper 23-like isoform X1
Refseq	XP_027354373.1	1e-160	basic leucine zipper 23-like isoform X1
Swissprot	Q8VY76	1e-109	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A1S3TL37	1e-157	A0A1S3TL37_VIGRR; basic leucine zipper 23
STRING	XP_007131714.1	1e-156	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-94	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]