PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3406920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 567aa    MW: 61729 Da    PI: 6.9098
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3406920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10419476562
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  Lj3g3v3406920.1 419 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 476
                      9********************************************9998877666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-18415479IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749417480IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-11419470No hitNo description
PfamPF001705.7E-9419473IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-9419476No hitNo description
CDDcd147031.57E-24420469No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MGGDSEDANH SEMMQRLHSC SSSFLKQGGN RSMEQLNIPQ FNASQMRGRH HFHNQGLGGG  60
GEGNNNNNNN SKRAGMPPSH PNQILPISPY SQIPVSRSQM GGSSSSSPAP THSRSLSQPS  120
SFFNLDSLPP LSPSPFRDSS STSMSDPASG DVSMEDRCDV SSHSLLPPTS PFARGVAVNN  180
HSNHRVGESL PPRKAHRRSN SDIPFGFSTV LQSSPPLIPL RGSVLNREPA LLVKKESAWE  240
RGGVDHNVEG SGEKKSPEGE VVDDLFSAYM NLDNIDVLNN NMDEKNCAEN RDDLDSSRAS  300
GNKTGGESSD NEAESSVNES GDSMQRQREG VKRSAGGDVA PTSRHYRSVS MDSFIGKLNF  360
NDDASKLPHS SGLISPGSGV DGNSAAFSLE FGNGEFSGPE LKKIMANEKL AEIAMADPKR  420
AKRILANRQS AARSKERKMR YISELEHKVQ TLQTEATTLS AQLTLLQRDS VGLTNQNSEL  480
KFRLQSMEQQ AKLRDALNEA LTAEVQRLKL ATAELNGESH PSSCLIPQHS VNPLMFQQQQ  540
QQQQQNIHLQ QQQQQNGNAI SKTDIKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.181380.0cell culture| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3406920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1345160.0BT134516.1 Lotus japonicus clone JCVI-FLLj-16M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027910179.10.0probable transcription factor PosF21
TrEMBLA0A4D6LJE20.0A0A4D6LJE2_VIGUN; Uncharacterized protein
STRINGXP_007131742.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-120bZIP family protein