PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v3214340.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 316aa MW: 34483.3 Da PI: 6.7754

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v3214340.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	59.8	5.7e-19	133	186	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+ + + Lt+e+v+SHLQkYRl Lj3g3v3214340.1 133 RPRLVWTPQLHKRFVDVVAHL-GIKNAVAEDDHAVDERGRLTRENVASHLQKYRL 186 59*****************.*****999999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.29E-12	130	190	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-19	132	191	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-15	134	186	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGEEVRMMDE ERLMEWEKGL PSVHDLTPLS QPLIPPELAT AFSISPEPRR TLLDVNRASR 60 NTLSILRSGG APLQALSSSD EEGEGGGGGG EEDDTTDRDG SGGSGSRKQR KVDCAAEEAD 120 SAVRTTDTAT LKRPRLVWTP QLHKRFVDVV AHLGIKNAVA EDDHAVDERG RLTRENVASH 180 LQKYRLYLKR MQGLSNEGPS SSDHLFASTP VPQSLHDSAA AAVAATAHSN SHSQTHSHSH 240 GHGNSSHLPV PIPMPYPPPM MSMPFHGMPH LHHGHGHMGM PLPSSSATSS YRSQYPFNML 300 HQRDWPHPHL APNDNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	4e-22	133	189	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.14034	0.0	cell culture\| protoplast

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v3214340.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017406245.1	1e-120	PREDICTED: transcription factor PCL1-like
Swissprot	Q9SNB4	1e-69	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A0L9T7Z0	1e-119	A0A0L9T7Z0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SDA0	1e-119	A0A0S3SDA0_PHAAN; Uncharacterized protein
STRING	VIT_06s0004g05120.t01	1e-111	(Vitis vinifera)
STRING	GLYMA12G06406.2	1e-111	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6957	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	2e-65	G2-like family protein

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]