PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3213190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 706aa    MW: 78611.4 Da    PI: 6.0004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3213190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.61.6e-1153377033373
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++cA+av+s d+++a+++L+++++++sp gd +qRla+y++++L++rl+  ++  y  l++     ++ ++ l+a+k++  +sP+ +++++
  Lj3g3v3213190.1 337 TLLTQCAQAVASYDQRNASEILKQIRDNSSPFGDGLQRLAHYVANGLETRLFA-GTPKYTLLQS-----SSAADMLKAYKVYITASPFWRMTNF 424
                      69**************************************************9.3333433333.....34679******************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN++Il+ v++ + vHiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rLak+++++gvpfe+n+ +a+++e+
  Lj3g3v3213190.1 425 LANRTILKLVQNVSSVHIIDFGIFYGFQWPCLIQRLSERPGGPPKLRITGIDLPQPGfrPTERVEETGWRLAKYCKRFGVPFEYNF-LAQKWET 517
                      ********************************************************9*****************************.6****** PP

             GRAS 189 leleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++le+L+++  +E+++Vn+ ++l++l de+v+++ +rd+vLkl+++++P+++++   +  +n++ Fl+rf eal ++s+lfd++ea++pre++ 
  Lj3g3v3213190.1 518 IRLEDLKIDMeEEVTVVNCLYRLKNLSDETVTVNCPRDAVLKLIRRVNPNIFIHGVINGTYNAPFFLTRFREALFHFSSLFDMFEATVPREDKY 611
                      ********9989999******************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      r + E+ l+gr++vnv+acegaer+er et+++W+ r ++aGFk++pl  +  + +k +++k + + + v+e+ +++++gWk+r L +vS+W
  Lj3g3v3213190.1 612 RLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRAGFKQLPLAPELSSRVKEMVKKEYHKDFVVDEDGKWVLQGWKGRILHAVSCW 703
                      ****************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.445309684IPR005202Transcription factor GRAS
PfamPF035145.5E-113337703IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MISMDSLLEN FPGSLNGCMF GNGPVSVFSN QNPGSGLNVE DSSSPSNHSE LAADSGPSAA  60
AAVGTTSSSN GESGESSKHS NPILRYISDI LMDEEDDLER KPCMLQDCLR LQAAEKSFYD  120
VLGRSYPSSP HQVQGGFRDD NADPDDGFGG GTTSSEGYSS NTTDTSCESD LVNGAGDFES  180
YFRQRALVDS PGNSSEVLDG VPLDPLRGTQ PGALFSNGAL DVIQWKVKPQ VIQESVIRGS  240
AATKGPREKR GHLMNNFSHV EEERSNKLSA VYSDDSELSE MFDEVLLCKD GKSPSFFCFN  300
HEPSQIAGSR GSNGKTSRSK KGSKKGTSPT TTVDLWTLLT QCAQAVASYD QRNASEILKQ  360
IRDNSSPFGD GLQRLAHYVA NGLETRLFAG TPKYTLLQSS SAADMLKAYK VYITASPFWR  420
MTNFLANRTI LKLVQNVSSV HIIDFGIFYG FQWPCLIQRL SERPGGPPKL RITGIDLPQP  480
GFRPTERVEE TGWRLAKYCK RFGVPFEYNF LAQKWETIRL EDLKIDMEEE VTVVNCLYRL  540
KNLSDETVTV NCPRDAVLKL IRRVNPNIFI HGVINGTYNA PFFLTRFREA LFHFSSLFDM  600
FEATVPREDK YRLMFEEGLF GRDAVNVIAC EGAERVERPE TYKQWQVRNR RAGFKQLPLA  660
PELSSRVKEM VKKEYHKDFV VDEDGKWVLQ GWKGRILHAV SCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4634170524379Protein SCARECROW
5b3h_D2e-4634170524379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.162840.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3213190.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592195.20.0uncharacterized protein LOC100815586
SwissprotQ9XE581e-179SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0B2RII60.0A0A0B2RII6_GLYSO; Scarecrow-like protein 14
TrEMBLK7LTB40.0K7LTB4_SOYBN; Uncharacterized protein
STRINGGLYMA12G06630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]