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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3211130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 210aa MW: 24502.4 Da PI: 8.3141 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 215.4 | 3e-66 | 2 | 208 | 102 | 306 |
GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 I +a++++e++H+iDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g +e+leetg+rLa+++++++vpfe+n+++++++e++++e+ Lj3g3v3211130.1 2 IKKAAAKAETLHVIDFGIFYGFQWPLLIKFLSERDGGPPKLRITGIEYPLPGfrPTERLEETGRRLANYCKRFNVPFEYNAVASRNWETIRVED 95 889999*******************************************99999***************************9999********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 L++k++E +aVn++l+ ++llde+ +++s+rd+vL+l+++++P+++ ++ + + n++ F++rf eal y+sa++d ++ +pr++++r+++Er Lj3g3v3211130.1 96 LKIKSNEFVAVNCMLRFKNLLDETIEMNSPRDAVLHLIRRINPDIFAHSIINGSFNAPFFVTRFREALFYFSAVYDICDSVIPRDNQWRMMIER 189 ********************************************************************************************** PP GRAS 288 ellgreivnvvacegaerr 306 e++gr+++nv+aceg er+ Lj3g3v3211130.1 190 EMVGRNAMNVIACEGLERI 208 ***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.312 | 1 | 210 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-63 | 2 | 208 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MIKKAAAKAE TLHVIDFGIF YGFQWPLLIK FLSERDGGPP KLRITGIEYP LPGFRPTERL 60 EETGRRLANY CKRFNVPFEY NAVASRNWET IRVEDLKIKS NEFVAVNCML RFKNLLDETI 120 EMNSPRDAVL HLIRRINPDI FAHSIINGSF NAPFFVTRFR EALFYFSAVY DICDSVIPRD 180 NQWRMMIERE MVGRNAMNVI ACEGLERIDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-27 | 2 | 209 | 101 | 306 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3211130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132055.1 | 1e-125 | hypothetical protein PHAVU_011G063200g | ||||
Refseq | XP_007132056.1 | 1e-123 | hypothetical protein PHAVU_011G063200g | ||||
Swissprot | P0C884 | 7e-94 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | V7AET1 | 1e-124 | V7AET1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132056.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 3e-96 | GRAS family protein |