PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3211120.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 751aa    MW: 84350.2 Da    PI: 6.4273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3211120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.1e-1123787481373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+avss+d + a+  L+++++++s  gd  qRla++f+ AL+ar+a+ + ++y al++++ts    ++ ++a++++  ++P+ k++
  Lj3g3v3211120.1 378 LRSLLILCAQAVSSDDRATASDSLKQIRQHSSLLGDGSQRLAHCFADALEARMAGIGAQTYTALSSKRTS---AADMVKAYQMYISACPFKKLA 468
                      6899************************************************************999999...99******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN++Il+ +++ e++Hi+Df+i +G+QWpaL+  L++Rp gpp+lRiTgv+ p++g   +e+++etg rLa+++++++vpfefn+ +a+++
  Lj3g3v3211120.1 469 IIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPCGPPKLRITGVELPQPGfrPAERVQETGLRLARYCDRFNVPFEFNA-IAQKW 561
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e+++le+L++k++E laVn++ + ++llde+v l+s+rd+vL+l+++ +P+++  +  + +++++ F++rf eal +ys+lfd l+++++re++
  Lj3g3v3211120.1 562 ETIKLEDLKIKKNELLAVNCMCRFKNLLDETVVLNSPRDAVLNLIRKANPTIFMQASLNGSYTAPFFVTRFREALFHYSTLFDVLDTNVAREDR 655
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r + E+e++gre++n++aceg+er+er et++ W  r ++aGF+++pl+++  ++ ++ l+  +   +++ e+ + +++gWk+r +++ S+W
  Lj3g3v3211120.1 656 MRLMFEKEFFGREVMNIIACEGSERVERPETYKLWMVRNTRAGFRQLPLDKHLINKLRSKLKDAYHSDFMLVEDGNFMLQGWKGRIIYASSCW 748
                      *****************************************************************777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.657352729IPR005202Transcription factor GRAS
PfamPF035143.2E-109378748IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MVDPHFKSNF TNSGKLNQVP NTLHMEDHSS GFMDNPFLLP PVPNNAQNHA SLSTIATYDE  60
DSPLDDTDFS ATVLHYINQM LMEEDMEKKT CMFHDSLALQ AAEKSFSEVI GETYPSSSIQ  120
NYHNVESPDD SLNSNFSGYT YSSSGTASTS SSIESNWGNV DLAEYKPSIL QTAFPPDFVF  180
HASSTSNSQS YMNSTSSFGA TDSGFVASSR AGFSDQTLLC KSDSVLQFER GFEEASKFLP  240
KTNPLVIDFE NRSHGYIPSI RKVPQQEVIK IEADENKHFS AEPRGRKNHE REDETDLQDG  300
RSNKQSAVYT DDSELSELFD KVLLGVPCGN QEAPSCILKE EQPNGPDISM GKKEETNKSG  360
GGKSRAKKQG DKKGVVDLRS LLILCAQAVS SDDRATASDS LKQIRQHSSL LGDGSQRLAH  420
CFADALEARM AGIGAQTYTA LSSKRTSAAD MVKAYQMYIS ACPFKKLAII FANHTILNLA  480
KEVETLHIVD FGIRYGFQWP ALIYRLSKRP CGPPKLRITG VELPQPGFRP AERVQETGLR  540
LARYCDRFNV PFEFNAIAQK WETIKLEDLK IKKNELLAVN CMCRFKNLLD ETVVLNSPRD  600
AVLNLIRKAN PTIFMQASLN GSYTAPFFVT RFREALFHYS TLFDVLDTNV AREDRMRLMF  660
EKEFFGREVM NIIACEGSER VERPETYKLW MVRNTRAGFR QLPLDKHLIN KLRSKLKDAY  720
HSDFMLVEDG NFMLQGWKGR IIYASSCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4738575026380Protein SCARECROW
5b3h_A3e-4738575025379Protein SCARECROW
5b3h_D3e-4738575025379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3211120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539083.10.0scarecrow-like protein 14 isoform X1
RefseqXP_028189930.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K3NP870.0A0A2K3NP87_TRIPR; SCARECROW-like protein 14-like
STRINGGLYMA11G14750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]