PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v3211110.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 402aa MW: 45741.1 Da PI: 10.0156

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v3211110.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.9	1.3e-112	29	399	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ cA+avss+d + a+ L+++++++s gd qRla++f+ AL+ar+a+ + ++y al++++ts ++ ++a++++ ++P+ k++ Lj3g3v3211110.1 29 LRSLLILCAQAVSSDDRATASDSLKQIRQHSSLLGDGSQRLAHCFADALEARMAGIGAQTYTALSSKRTS---AADMVKAYQMYISACPFKKLA 119 6899**********************************************************999999...99*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + aN++Il+ +++ e++Hi+Df+i +G+QWpaL+ L++Rp gpp+lRiTgv+ p++g +e+++etg rLa+++++++vpfefn+ +a+++ Lj3g3v3211110.1 120 IIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPCGPPKLRITGVELPQPGfrPAERVQETGLRLARYCDRFNVPFEFNA-IAQKW 212 ******************************************************9*************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+++le+L++k++E laVn++ + ++llde+v l+s+rd+vL+l+++ +P+++ + + +++++ F++rf eal +ys+lfd l+++++re++ Lj3g3v3211110.1 213 ETIKLEDLKIKKNELLAVNCMCRFKNLLDETVVLNSPRDAVLNLIRKANPTIFMQASLNGSYTAPFFVTRFREALFHYSTLFDVLDTNVAREDR 306 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r + E+e++gre++n++aceg+er+er et++ W r ++aGF+++pl+++ ++ ++ l+ + +++ e+ + +++gWk+r +++ S+W Lj3g3v3211110.1 307 MRLMFEKEFFGREVMNIIACEGSERVERPETYKLWMVRNTRAGFRQLPLDKHLINKLRSKLKDAYHSDFMLVEDGNFMLQGWKGRIIYASSCW 399 *************************************************************777*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.657	3	380	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-110	29	399	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MGKKEETNKS GGGKSRAKKQ GDKKGVVDLR SLLILCAQAV SSDDRATASD SLKQIRQHSS 60 LLGDGSQRLA HCFADALEAR MAGIGAQTYT ALSSKRTSAA DMVKAYQMYI SACPFKKLAI 120 IFANHTILNL AKEVETLHIV DFGIRYGFQW PALIYRLSKR PCGPPKLRIT GVELPQPGFR 180 PAERVQETGL RLARYCDRFN VPFEFNAIAQ KWETIKLEDL KIKKNELLAV NCMCRFKNLL 240 DETVVLNSPR DAVLNLIRKA NPTIFMQASL NGSYTAPFFV TRFREALFHY STLFDVLDTN 300 VAREDRMRLM FEKEFFGREV MNIIACEGSE RVERPETYKL WMVRNTRAGF RQLPLDKHLI 360 NKLRSKLKDA YHSDFMLVED GNFMLQGWKG RIIYASSCWV PA

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MGKKEETNKS GGGKSRAKKQ GDKKGVVDLR SLLILCAQAV SSDDRATASD SLKQIRQHSS  60
LLGDGSQRLA HCFADALEAR MAGIGAQTYT ALSSKRTSAA DMVKAYQMYI SACPFKKLAI  120
IFANHTILNL AKEVETLHIV DFGIRYGFQW PALIYRLSKR PCGPPKLRIT GVELPQPGFR  180
PAERVQETGL RLARYCDRFN VPFEFNAIAQ KWETIKLEDL KIKKNELLAV NCMCRFKNLL  240
DETVVLNSPR DAVLNLIRKA NPTIFMQASL NGSYTAPFFV TRFREALFHY STLFDVLDTN  300
VAREDRMRLM FEKEFFGREV MNIIACEGSE RVERPETYKL WMVRNTRAGF RQLPLDKHLI  360
NKLRSKLKDA YHSDFMLVED GNFMLQGWKG RIIYASSCWV PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-50	36	401	26	380	Protein SCARECROW
5b3h_A	2e-50	36	401	25	379	Protein SCARECROW
5b3h_D	2e-50	36	401	25	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v3211110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028192193.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2K3NP87	0.0	A0A2K3NP87_TRIPR; SCARECROW-like protein 14-like
STRING	GLYMA12G06670.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]