PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v3189700.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 329aa MW: 35673.6 Da PI: 9.2223

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v3189700.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.3	5.3e-36	82	141	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e al+cprC+stn kfCy+ nyslsqPr+fCkaCrryWt GGalrnvPvGgg+r+nkks+ Lj3g3v3189700.1 82 EPALTCPRCNSTNPKFCYFYNYSLSQPRHFCKACRRYWTSGGALRNVPVGGGCRRNKKSK 141 67899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	70	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-30	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.248	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MVFSSIPVYV DPPNWHQQQP NHQHQHQHQH HHQLNGSDNT HLLPPLPPLA AEMAGGGGGS 60 MGSIRPGSMA DRARLAKIPP PEPALTCPRC NSTNPKFCYF YNYSLSQPRH FCKACRRYWT 120 SGGALRNVPV GGGCRRNKKS KRSRSKSPSS SEKQTPSSSA NNNNSIPSTH EMLGQLPPQP 180 PTLPFMASLQ NLSRYGVGNM GLRMGENIHQ GQNDHMGFQI GGVGNSVSGG GVEQWRLQQF 240 PFLNGFESTT SPGSNYPFQS EGNIDGASDF VGDLASSSRV TQVPPVKMED NGGLNLSRSS 300 LNNVSENNHY FSLPDMSGLA SSSTTSHLL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.17897	1e-137	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v3189700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027910765.1	1e-146	dof zinc finger protein DOF3.6-like
TrEMBL	A0A4D6LI58	1e-145	A0A4D6LI58_VIGUN; Uncharacterized protein
STRING	GLYMA12G06880.2	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-33	Dof family protein