PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3166200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 139aa MW: 15256.8 Da PI: 9.5062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00083 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Lj3g3v3166200.1 76 HSCPICGIEFAIGQALGGHMRKH 98 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.1E-9 | 25 | 48 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.75E-8 | 25 | 98 | No hit | No description |
PROSITE profile | PS50157 | 9.245 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-7 | 76 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.704 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEGDMANCLM LLSKVGESCN NGDGFVCKTC NREFLSFQAL GGHRASHKRL KLMAAGLSSF 60 SSRPLQGLRE KKQKMHSCPI CGIEFAIGQA LGGHMRKHRA AMNDGGAKRS DHLCLDLNLT 120 PYENDLNLIL RTPPLSKKI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3166200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT149162 | 0.0 | BT149162.1 Lotus japonicus clone JCVI-FLLj-5I9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027347803.1 | 8e-54 | zinc finger protein ZAT12-like | ||||
Swissprot | Q9LX85 | 4e-28 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | I3T8W4 | 2e-96 | I3T8W4_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA11G15140.1 | 2e-48 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-35 | C2H2 family protein |