PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3086110.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 182aa    MW: 20991.5 Da    PI: 10.1728
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3086110.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC491.3e-1574164999
            NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      + e+ ++ k h +P+ ri+ ++k ++   ++s+ea   + ka e f+ ++t  ++ +a + ++++l  + +a +v++   +dfl d vp++
  Lj3g3v3086110.3  74 EEEDIEEAKSHVFPMNRIRTMIKGEDPEARVSTEAILAINKAAEKFLEQFTQEAYTRAVQDRKKSLSYNHLAHVVSKQRRYDFLSDFVPEK 164
                      467788999**************9998999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.04E-1752157IPR009072Histone-fold
PfamPF008089.5E-1486148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.1E-2386163IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASSNNSKSQ NNKKIKTEKE RAIIDKKNKK PKKEKEEESK ITKNKKLKLT NGNGNGNSKK  60
HHRQQEQKHE EEDEEEDIEE AKSHVFPMNR IRTMIKGEDP EARVSTEAIL AINKAAEKFL  120
EQFTQEAYTR AVQDRKKSLS YNHLAHVVSK QRRYDFLSDF VPEKVRAEDA LREISSRGNG  180
GG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.136900.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3086110.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049590.0AP004959.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT21I12, TM0136, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606405.15e-59DNA polymerase epsilon subunit 4
TrEMBLG7JPE71e-57G7JPE7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGAES886022e-58(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-26nuclear factor Y, subunit C10