PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3085960.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C3H | ||||||||
Protein Properties | Length: 870aa MW: 95396.2 Da PI: 5.0358 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.6e-08 | 70 | 97 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+ C++G +C+FaH++ Lj3g3v3085960.3 70 WKTSLCSYFRSHNgSCSHGTTCRFAHSE 97 8******7776658************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-13 | 67 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.55E-6 | 67 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 69 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-5 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-6 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
CDD | cd00590 | 0.00594 | 154 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.70.330 | 1.5E-4 | 157 | 219 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 43.916 | 270 | 870 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 2.74E-45 | 273 | 298 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.74E-45 | 330 | 464 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.74E-45 | 504 | 624 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 7.7E-64 | 524 | 624 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 3.0E-9 | 568 | 625 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 2.91E-6 | 570 | 658 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 7.7E-64 | 753 | 809 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 3.4E-8 | 756 | 805 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 2.74E-45 | 757 | 810 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
PROSITE pattern | PS01230 | 0 | 765 | 797 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 7.7E-64 | 845 | 870 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 2.74E-45 | 854 | 870 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 870 aa Download sequence Send to blast |
MAEEEPVLIT EPSSPKTLDP IHAHGSTTES HQSPPQDALS NQPNDDVAPT EKRKRDDGDG 60 DGERKVHPLW KTSLCSYFRS HNGSCSHGTT CRFAHSEEEL RLRPDNTWDP TSERAKKAQK 120 SETGEKRDVA DRVMMTEAVD DDDEDGGDDA LRKCLVHLPR KWSSENFRKF LNDEGVPFKY 180 AKKKTGMMIG FVTFEDEEQM KSSSKELDGK SCGAKSLEVA DVIRRSSEKK NIGVPALNKE 240 NSENGTSDAE MNDDVVAVDG SSKKRTVRDV VTPLADVPYA DQLEQKKSSL MQILKKLTRN 300 VRKAIPTGVP RPEWILKSSE IGGLPCKLEG IIASPIVNGY RNKCEFSVGY SLEGKVTVGF 360 MLGNFREGVT AVEEAVDCPN VSTIARKYAT IFQEFLQHTD LPVWNRFKNT GFWRQLTVRE 420 GRANANVGDA ETFDGIAEVM LMVQVSTANF DDAQVAAEFK RLAQEFVAGA NLHCPVLPLS 480 ALVIQDHVGI SNVAPADAPL RYLPISKAAG DTEMDANNNA MDVRIHDYIN NLRFSISPTA 540 FFQVNSLAAE KLYSLAGDWA CLGPDTLLFD ICCGTGTIGL TLAHRVGMVI GIEMNASAIS 600 DAHRNAEING IKNFRFICSK AEDVMGSLLR EYINVPKEQV DDPSISENDN DIPEEIACPE 660 PEKGELASDC PENNSSEAVS EVQKGSTSEG YINVPKEQVD DPSISGNGND IPEEIACPEP 720 EKGEAASDCP ENNSSKAGSE VQKGSTSENG NTSRKQFKNV VAIVDPPRAG LHPTVIKALR 780 THPGLRRLVY ISCNPETLVA NAIELCTPSP ATNEKVKKDN RGWRNRSMAG LARHRAKSMP 840 ISEAFQPVKA MAVDLFPHTP HCELVMLLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 3e-16 | 526 | 643 | 263 | 384 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 3e-16 | 526 | 643 | 262 | 383 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 3e-16 | 526 | 643 | 263 | 384 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.12830 | 0.0 | protoplast| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3085960.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194610.1 | 0.0 | zinc finger CCCH domain-containing protein 24-like | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A445HM28 | 0.0 | A0A445HM28_GLYSO; Zinc finger CCCH domain-containing protein 24 | ||||
STRING | GLYMA12G07300.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8854 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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