PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3085960.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 590aa    MW: 65060.1 Da    PI: 5.1815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3085960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-087097127
                     --S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                     +kt+lC++f+     C++G +C+FaH++
  Lj3g3v3085960.1 70 WKTSLCSYFRSHNgSCSHGTTCRFAHSE 97
                     8******7776658************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.58E-767102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-1367101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4556998IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-56997IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-67097IPR000571Zinc finger, CCCH-type
CDDcd005900.00377154219No hitNo description
SuperFamilySSF549288.69E-5156224IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3309.2E-5157219IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168724.369270590IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533357.93E-25273298IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.93E-25330464IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.93E-25504587IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.8E-19524587IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAEEEPVLIT EPSSPKTLDP IHAHGSTTES HQSPPQDALS NQPNDDVAPT EKRKRDDGDG  60
DGERKVHPLW KTSLCSYFRS HNGSCSHGTT CRFAHSEEEL RLRPDNTWDP TSERAKKAQK  120
SETGEKRDVA DRVMMTEAVD DDDEDGGDDA LRKCLVHLPR KWSSENFRKF LNDEGVPFKY  180
AKKKTGMMIG FVTFEDEEQM KSSSKELDGK SCGAKSLEVA DVIRRSSEKK NIGVPALNKE  240
NSENGTSDAE MNDDVVAVDG SSKKRTVRDV VTPLADVPYA DQLEQKKSSL MQILKKLTRN  300
VRKAIPTGVP RPEWILKSSE IGGLPCKLEG IIASPIVNGY RNKCEFSVGY SLEGKVTVGF  360
MLGNFREGVT AVEEAVDCPN VSTIARKYAT IFQEFLQHTD LPVWNRFKNT GFWRQLTVRE  420
GRANANVGDA ETFDGIAEVM LMVQVSTANF DDAQVAAEFK RLAQEFVAGA NLHCPVLPLS  480
ALVIQDHVGI SNVAPADAPL RYLPISKAAG DTEMDANNNA MDVRIHDYIN NLRFSISPTA  540
FFQVNSLAAE KLYSLAGDWA CLGPDTLLFD ICCGTGTIGL TLAHRVGDWN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.128300.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3085960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194610.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A445HM280.0A0A445HM28_GLYSO; Zinc finger CCCH domain-containing protein 24
STRINGGLYMA12G07300.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]