PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2994560.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 394aa MW: 44506.2 Da PI: 7.5563

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2994560.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	88	129	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAA++sR+RKka++++Le +L+ ++L Lj3g3v2994560.2 88 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLSHLEQDL 129 6889*************************9777666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-7	85	161	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	87	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-8	88	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	89	129	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-7	90	131	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.4E-30	169	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MNTLSTKTEL QFETDSPTSI KASSSDHHHA FDQHHLQLQQ QKQHQLQHEK TTDHDASKAD 60 PPQNQPAAKS AQEKRKGAGS TSEKPLDAKT LRRLAQNREA AKKSRLRKKA YVQQLESSRL 120 KLSHLEQDLQ RLRSQGLFLG CGVAGGNLSS GAAMFDMEYA RWLEDDHQHM AELRTGLQAP 180 LSDNELRVIV DGYLYHYDEL FRLKGVAAKS DVFHLINGMW TSPTERCFLW IGGFRPSELI 240 TMLIQQLEPL AEQQIVGIYG LRHSSQQAEE ALSQGLEQLR HFLIDTIAGA PVVDGVQQMV 300 VAMGKLANLE GFVHQADNLR QQSIHQLCRL LTIRQAARCF VVIGEYYGRL RALSSLWASR 360 PRDHQQTLIS DDNSCQTTTE LQMVQSHQGH FSNF

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MNTLSTKTEL QFETDSPTSI KASSSDHHHA FDQHHLQLQQ QKQHQLQHEK TTDHDASKAD  60
PPQNQPAAKS AQEKRKGAGS TSEKPLDAKT LRRLAQNREA AKKSRLRKKA YVQQLESSRL  120
KLSHLEQDLQ RLRSQGLFLG CGVAGGNLSS GAAMFDMEYA RWLEDDHQHM AELRTGLQAP  180
LSDNELRVIV DGYLYHYDEL FRLKGVAAKS DVFHLINGMW TSPTERCFLW IGGFRPSELI  240
TMLIQQLEPL AEQQIVGIYG LRHSSQQAEE ALSQGLEQLR HFLIDTIAGA PVVDGVQQMV  300
VAMGKLANLE GFVHQADNLR QQSIHQLCRL LTIRQAARCF VVIGEYYGRL RALSSLWASR  360
PRDHQQTLIS DDNSCQTTTE LQMVQSHQGH FSNF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2994560.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027346073.1	0.0	transcription factor TGA9-like isoform X1
Refseq	XP_027346074.1	0.0	transcription factor TGA9-like isoform X2
Swissprot	Q93XM6	1e-177	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3TCN1	0.0	A0A1S3TCN1_VIGRR; transcription factor TGA9 isoform X1
STRING	GLYMA12G30990.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-180	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]