PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2994480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YB | ||||||||
Protein Properties | Length: 109aa MW: 12374.2 Da PI: 8.7233 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 42.2 | 1.9e-13 | 7 | 99 | 8 | 95 |
NF-YB 8 lPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP + v r++k l +++ i kda e + fi ++++ a+d c++ +r+ in++d++ al + f +++ pl++ l+++r+ ++ Lj3g3v2994480.1 7 LPKTIVRRVVKDKLSrcsEDGdiSIHKDALLAFSESAKIFIHYISATANDICKESRRQIINAEDVFKALEETEFAEFIRPLRASLEEFRKKNA 99 67777888888887522233411567999999*********************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.47E-23 | 7 | 107 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-9 | 7 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.1E-29 | 7 | 107 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAEPDDLPKT IVRRVVKDKL SRCSEDGDIS IHKDALLAFS ESAKIFIHYI SATANDICKE 60 SRRQIINAED VFKALEETEF AEFIRPLRAS LEEFRKKNAG KKAAASKYK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2994480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143452 | 0.0 | BT143452.1 Lotus japonicus clone JCVI-FLLj-16I11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214165.1 | 2e-61 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | I3SSK4 | 1e-72 | I3SSK4_LOTJA; Uncharacterized protein | ||||
STRING | XP_004506183.1 | 2e-60 | (Cicer arietinum) | ||||
STRING | GLYMA11G18960.1 | 3e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 8e-43 | nuclear factor Y, subunit B11 |