PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2921060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 580aa MW: 61806.3 Da PI: 5.6671 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 328 | 386 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+ Lj3g3v2921060.1 328 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKTVLITTYEGNHNHP 386 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-33 | 312 | 388 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 320 | 388 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.861 | 322 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-37 | 327 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 329 | 386 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MDDSDPSGTS SFLHNNPIVL NSFTMEAKGS SSSPSSSPTP TTTNTTIPFQ VNLTSPITTT 60 SSHENNIIRT EVDFFKDNNS NKVVVSASAS VPENNNNNDH HHLPTPSLLE FKVNTGLNLL 120 TTNTSSDQSM VDDGNGNGIS PNSDDKRTKN ELAVLQAELE RMKVENHRLK NTLEEMNTNY 180 NALQMHLVSM MQDQKTEDAE KQEVFDGKLE EKKQGAANGG GVLVPRQFMD LGLASNVEND 240 EPSSSSLGRS QDQSGSAGNN MEVGSKELAT IKNGNASDER EDSPSGQGCG ADKVPRSSLP 300 KNNVDQAEAT MRKARVSVRA RSEAPMITDG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP 360 VRKQVQRCAE DKTVLITTYE GNHNHPLPPA AMAMAQTTSS AARMLLSGSM SSTDNLMNAN 420 FLTRTLLPCS SSMATISASA PFPTVTLDLT QSPNPLNPLQ FPRPPNQLQI PFPGVNPQNF 480 ANSPASLMPQ IFGQALYNQS KFSGLQLSQD AAAGAPNLAD TVSAAIATDP NFTAALAAAI 540 TSIIGGAQPN NNSGATTNNN GNMNASNSNI TSSNNNSNGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-23 | 314 | 390 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2921060.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006139 | 0.0 | AP006139.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT02A16, TM0243, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234210.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-131 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A151S0H3 | 0.0 | A0A151S0H3_CAJCA; WRKY transcription factor 6 | ||||
STRING | XP_007132527.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-111 | WRKY family protein |