PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2887010.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 291aa    MW: 33045.7 Da    PI: 4.6024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2887010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Lj3g3v2887010.1 14 KGTWTAEEDKKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding60.53.6e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+e++++ +k+lG++ W+tIa++++ gRt+ ++k++w++ 
  Lj3g3v2887010.1  67 RGNFTQEEEEIIIRMHKKLGNR-WSTIAAELP-GRTDSEVKNHWHTT 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.563961IPR017930Myb domain
SuperFamilySSF466892.5E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-91363IPR001005SANT/Myb domain
PfamPF002495.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241568IPR009057Homeodomain-like
CDDcd001676.24E-91661No hitNo description
PROSITE profilePS5129427.99462116IPR017930Myb domain
SMARTSM007172.7E-1866114IPR001005SANT/Myb domain
PfamPF002493.4E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2569115IPR009057Homeodomain-like
CDDcd001676.75E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MARTPSCDKS GMRKGTWTAE EDKKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNIKRGNF TQEEEEIIIR MHKKLGNRWS TIAAELPGRT DSEVKNHWHT TLKRTVHEQN  120
TVTNEETKVS NSKNERDPVP KSGIASLLVT PPPATSISGS IGALSPFSTS SEFSCTTSDL  180
TTSSSSEMLV FEDDFDFLDD FTENVNENFW SDLEPYLANI SNKPNETELQ IETNCALQNQ  240
DNIQILDACE LSPNQSSSEN LILESDFGCF LDENTDRTLD NFWGQPYVTD M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141167108B-MYB
1h8a_C3e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.125350.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2887010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097500.0AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348209.11e-127transcription factor MYB14-like
TrEMBLA0A151S6501e-109A0A151S650_CAJCA; Myb-related protein Myb4
TrEMBLA0A1S2Z2061e-109A0A1S2Z206_CICAR; transcription factor MYB30-like
STRINGXP_004513558.11e-110(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-57myb domain protein 13