PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2886960.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 334aa    MW: 38214.9 Da    PI: 4.592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2886960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Lj3g3v2886960.1 14 KGTWTAEEDRKLTAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding59.86.1e-1967110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+e++++ +k+lG++ W+tIa++++ gRt++++k++w++
  Lj3g3v2886960.1  67 RGNYTQEEEEIIIRMHKKLGNR-WSTIAAELP-GRTDNEVKNHWHT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.766961IPR017930Myb domain
SuperFamilySSF466899.77E-2911108IPR009057Homeodomain-like
SMARTSM007179.4E-91363IPR001005SANT/Myb domain
PfamPF002491.9E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-231568IPR009057Homeodomain-like
CDDcd001672.38E-81661No hitNo description
PROSITE profilePS5129426.9262116IPR017930Myb domain
SMARTSM007175.0E-1866114IPR001005SANT/Myb domain
PfamPF002493.0E-1667110IPR001005SANT/Myb domain
CDDcd001677.42E-1369112No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MARTPSCDKS GMRKGTWTAE EDRKLTAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNIKRGNY TQEEEEIIIR MHKKLGNRWS TIAAELPGRT DNEVKNHWHT SLKRRVHEQN  120
ATTNQETKVL NSKNVESTSG RDHVSKNGSA SLQVTFPETS QFSDSTGSLP PFSSSSEFSC  180
ISSELTTTSS SIEKLVFEDD FDFLDAFTEH VNENFWSDSE KFDLANISYT PNETVMQIDT  240
NFALQNQDTT QIFDACALSP NQSSSDSLVL DNDLGSFLDA NTDPTIDDFW RQPYVTDTSF  300
AAESEYFSTV YDAADDLWSQ SNLYDEQHFC LFYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2886960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097500.0AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348209.11e-145transcription factor MYB14-like
TrEMBLA0A445KFY71e-122A0A445KFY7_GLYSO; Transcription factor MYB14 isoform A
TrEMBLK7KY781e-122K7KY78_SOYBN; Uncharacterized protein
STRINGGLYMA06G45547.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.12e-58myb domain protein 13