PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2838560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 339aa    MW: 37293.7 Da    PI: 6.9504
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2838560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.6e-38221452116
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg..... 88 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++    +++s+ e++++ ++++ ss+      
  Lj3g3v2838560.1  22 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppW-QPPSNLEQVQEAEQNAGSSEMgiaeq 114
                      79**************************************************************743.33335555555555554444456554 PP

              TCP  89 ...kaaksaakskksqksaasalnlakesra 116
                         +  +++ +++ +++++++++n ++++++
  Lj3g3v2838560.1 115 sesSGYNFHLQRQLAEDPDNHHHNQQHNHQN 145
                      4443334444444444444444444444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3422145IPR005333Transcription factor, TCP
PROSITE profilePS5136932.9792482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRMKSTGGEI IHVEGGHIVR STGRKDRHSK VYTSKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKSAID KLAELPPWQP PSNLEQVQEA EQNAGSSEMG IAEQSESSGY  120
NFHLQRQLAE DPDNHHHNQQ HNHQNSAFIP SSIDNDAIAF FPTTTAASSI NFQSYPAQDL  180
GLSLHSFQDH GLIHAQSQTG GGQTSSDQTL FSGSTPSGFD TNYHRIVTWN NDSTTTDMNR  240
GGFMVNSPAI LGHGTSAYSH RGTLQSSFSP SLRPWNEIPM ASSDNHNHKA IHQASIFGSR  300
FLSDAIPGFC IPARIQGEDE SHGVSSDRPS SPSPNSHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-222982154Putative transcription factor PCF6
5zkt_B1e-222982154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.203360.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2838560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049770.0AP004977.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT12A10, TM0160, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341095.11e-180transcription factor TCP4-like
RefseqXP_027341096.11e-180transcription factor TCP4-like
RefseqXP_027341097.11e-180transcription factor TCP4-like
TrEMBLA0A1S3VVI71e-176A0A1S3VVI7_VIGRR; transcription factor TCP4
STRINGGLYMA13G36840.31e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-56TCP family protein