PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v2823270.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 285aa MW: 32363.2 Da PI: 8.171

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2823270.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.2	8.2e-33	49	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+Ptd+e++ e+L++kv+++ ++++ +++ +i+ ++P++Lp v ++ + +fF++ +k+y+tg+rk+r+++ + Lj3g3v2823270.1 49 LPAGVKFDPTDQEIL-EHLEAKVRSDIhmlhplIDEFIpTLEGEnGICCTHPEKLP-GVGKDGQIRHFFHRPSKAYTTGTRKRRKVHtdsdgsE 140 799*********9.99*99986664432222222333336******.566666777**************7444465557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l Lj3g3v2823270.1 141 TRWHKTGKTRPVYI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 189 88********.999*******5444788889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-37	44	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.704	49	208	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	50	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTAECSYPED NDSIIVERRK DSLIRTCPTC GHHVKYQDQG GGIHDLPGLP AGVKFDPTDQ 60 EILEHLEAKV RSDIHMLHPL IDEFIPTLEG ENGICCTHPE KLPGVGKDGQ IRHFFHRPSK 120 AYTTGTRKRR KVHTDSDGSE TRWHKTGKTR PVYISGKLKG YKKILVLYTN YRKQRKPEKT 180 NWVMHQYHLG NNEEEKEGEL VVSKVFYQTQ PRQCGGSGSL IKDSFPAKVL NGHDQVANHN 240 HNNSGYVEYY SNASSFISFD QGEQQHRSNN AQVISHFDGA PFINP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2823270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229460.1	1e-164	NAC domain-containing protein 73
Refseq	XP_029129599.1	1e-164	NAC domain-containing protein 73
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A151SF00	1e-163	A0A151SF00_CAJCA; NAC domain-containing protein 8
STRING	XP_004487194.1	1e-162	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]