PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2809840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 152aa    MW: 16908.4 Da    PI: 8.7697
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2809840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP772.9e-2495146152
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 
                      +Cq+e+C+adl +ak+yhrrhkvCe h+ka+vvlv g++qrfCqqCsrf e+
  Lj3g3v2809840.1  95 CCQAEKCNADLHDAKQYHRRHKVCEYHAKAQVVLVGGTRQRFCQQCSRFGEV 146
                      6************************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-2588146IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.52993152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-2294145IPR004333Transcription factor, SBP-box
PfamPF031108.1E-1996146IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEHFVVLTSS FPFSSASFCL LLFSPHIIPL SNQLQPTIDT SLLPLHMDGS EAKAMRSDKV  60
QQVTMNDQNG YQEVDKKKKG KGSGSSGGGG SITRCCQAEK CNADLHDAKQ YHRRHKVCEY  120
HAKAQVVLVG GTRQRFCQQC SRFGEVRLLC FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1884146161squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2809840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073050.0AP007305.2 Lotus japonicus genomic DNA, chromosome 3, clone: LjT29I08, TM1257, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275728.12e-32PREDICTED: squamosa promoter-binding protein 1 isoform X2
RefseqXP_020229499.16e-32squamosa promoter-binding-like protein 4
TrEMBLA0A438EGP24e-31A0A438EGP2_VITVI; Squamosa promoter-binding-like protein
TrEMBLE0CTG44e-31E0CTG4_VITVI; Squamosa promoter-binding-like protein
STRINGVIT_12s0028g03350.t016e-32(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-21squamosa promoter binding protein-like 8