PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2745060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36622.2 Da PI: 6.3568 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.5e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++++ +G+g+W+ ++ g+ R++k+c++rw +yl Lj3g3v2745060.1 15 KGPWTPEEDNLLINYIQTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.8e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Lj3g3v2745060.1 68 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.685 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-13 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.184 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.95E-12 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRAPCCDNK SGLKKGPWTP EEDNLLINYI QTHGPGNWRN LPKNAGLQRC GKSCRLRWTN 60 YLRPDIRRGR FSFEEEETII QLHSVLGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRM 120 GIDPVTHAPR LDLLDMSNVL RTALTNPAFL NLQGLFGAQS LVNPELLKLA ATATLLSLKN 180 DNTGLISQNP QQINGIMNCH QVQNQVVPPE FTTSQLQTPI QSNNMAMNMS SSSSPENSNS 240 INPSYFGDGL VPQQYQVDNL QQNLESVYQN MMGYDSVLST PLSTPGTTTL NSPANFANSS 300 AEEERDTYCS DMFKFEIPES LDISDFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-29 | 13 | 117 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-30 | 13 | 117 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-30 | 13 | 117 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22061 | 0.0 | protoplast |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2745060.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424703.1 | 1e-161 | PREDICTED: transcription factor MYB80-like | ||||
Swissprot | Q9LDR8 | 1e-101 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A386PXR5 | 1e-168 | A0A386PXR5_9FABA; MYB transcription fator (Fragment) | ||||
STRING | XP_007149908.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF850 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-90 | MYB-like 102 |
Publications ? help Back to Top | |||
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