PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2745060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 327aa    MW: 36622.2 Da    PI: 6.3568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2745060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++++ +G+g+W+  ++  g+ R++k+c++rw +yl
  Lj3g3v2745060.1 15 KGPWTPEEDNLLINYIQTHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP

2Myb_DNA-binding53.74.8e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Lj3g3v2745060.1  68 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-25765IPR009057Homeodomain-like
PROSITE profilePS5129425.6851066IPR017930Myb domain
SuperFamilySSF466892.21E-3112109IPR009057Homeodomain-like
SMARTSM007177.0E-151464IPR001005SANT/Myb domain
PfamPF002491.1E-161562IPR001005SANT/Myb domain
CDDcd001674.03E-131762No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2666117IPR009057Homeodomain-like
PROSITE profilePS5129420.18467117IPR017930Myb domain
SMARTSM007171.1E-1567115IPR001005SANT/Myb domain
PfamPF002491.9E-1568112IPR001005SANT/Myb domain
CDDcd001673.95E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRAPCCDNK SGLKKGPWTP EEDNLLINYI QTHGPGNWRN LPKNAGLQRC GKSCRLRWTN  60
YLRPDIRRGR FSFEEEETII QLHSVLGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRM  120
GIDPVTHAPR LDLLDMSNVL RTALTNPAFL NLQGLFGAQS LVNPELLKLA ATATLLSLKN  180
DNTGLISQNP QQINGIMNCH QVQNQVVPPE FTTSQLQTPI QSNNMAMNMS SSSSPENSNS  240
INPSYFGDGL VPQQYQVDNL QQNLESVYQN MMGYDSVLST PLSTPGTTTL NSPANFANSS  300
AEEERDTYCS DMFKFEIPES LDISDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-29131172105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-30131172105C-Myb DNA-Binding Domain
1msf_C9e-30131172105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.220610.0protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2745060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424703.11e-161PREDICTED: transcription factor MYB80-like
SwissprotQ9LDR81e-101MY102_ARATH; Transcription factor MYB102
TrEMBLA0A386PXR51e-168A0A386PXR5_9FABA; MYB transcription fator (Fragment)
STRINGXP_007149908.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-90MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]