PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2691880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 523aa    MW: 57315.7 Da    PI: 8.3821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2691880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001690112123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++C+k F r  nL+ H r H
  Lj3g3v2691880.1  90 FFCEICSKGFQRDQNLQLHRRGH 112
                      67*******************88 PP
2zf-C2H212.70.00039166188123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Lj3g3v2691880.1 166 WKCEKCSKKYAVQSDWKAHSKTC 188
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-489112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-689112No hitNo description
PROSITE profilePS5015710.65890112IPR007087Zinc finger, C2H2
SMARTSM003550.09390112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM0035582131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-6161186No hitNo description
SMARTSM00355140166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MFHQQQQQQQ PVMEENMSNL TSASGEASAN SSGNRTEIGT SYPPQQYLDH PPPTQTQPVL  60
KKKRNLPGNP DPDAEVVAMS PKSLLATNRF FCEICSKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTSKEVKKKV YVCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARGETGGTL TNNPLVLPPP  240
SQSQQPSSSS NHHQHMINLQ TQFNHHLQNN QNLLHGFPLK KEQLSFNFGQ EIMPPWLGPQ  300
SSTINNVDHH HHNLSSASMF SSQEENPNPS MGPTLPPYQT VPPSPHMSAT ALLQKAAQMG  360
ATMTTTTTAA SAPAMISRTH HQPHVPPHSA ANNNSSIGNF GFNLSSRDAA AAGVTAAPPS  420
LLHDVINSFS SNSAFEGNPF EDSFSAILNS KKELNFHDND TLSKKATTTT DSGGGGGGGG  480
GNDDLTRDFL GLRPLSHSDI LSIAGIGNCM SDQENQSQKP WQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35162233371Zinc finger protein JACKDAW
5b3h_F1e-35162233371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.210470.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2691880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045210.0AP004521.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT17K09, TM0049a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335364.10.0protein indeterminate-domain 11-like isoform X2
TrEMBLA0A371I9R60.0A0A371I9R6_MUCPR; Protein indeterminate-domain 7 (Fragment)
STRINGGLYMA08G20520.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-100C2H2 family protein