PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2634550.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 467aa    MW: 52097.6 Da    PI: 8.1711
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2634550.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-07356404348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G g W+ I r        Rt  ++k++w+++l
  Lj3g3v2634550.3 356 AWTLVEVMKLVEGVSRCGAGKWSEIKRLSFssaSYRTSVDLKDKWRNLL 404
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.472349408IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-12351411IPR009057Homeodomain-like
SMARTSM007179.7E-8353406IPR001005SANT/Myb domain
CDDcd116601.63E-19355405No hitNo description
SuperFamilySSF466893.91E-15355414IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVDEEICLDK LSIRELHELF KVTFGRETTV KDKQWLKRRI SMSLTNSCDV SATTFIVKDN  60
KMIRKCEEDC SGNVNAADVI SVENVAGEED SKFKDSSAVE DCGFENNPSV TESSLENLNM  120
EHELSGEDHL REQRAAKRMR RPTKRYIEEL SENESREHNP RLPSSNKNMG FGHVSPTSCA  180
RPAGNAFPEA RTFITRLDSL GGSGIQIPCV SRVRRSRPRK NLTSLMKTPS LFQKFHPTGV  240
GEAAELGCKV LREHGSDGGE SQDCGESQDG GESQDQVLKP RPSCEKVHQP FASEPVQEKQ  300
CSAIGTTELQ QELRPKREEP KREEPKREEP SSHPSEDNIV TVPTAKGGMR RKHHRAWTLV  360
EVMKLVEGVS RCGAGKWSEI KRLSFSSASY RTSVDLKDKW RNLLKASYAQ TPADVGMKKH  420
GTVPIPEPIL VRVRELAERN SQVPSSYISS KSKAGAGVVY GDRSGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2634550.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359134e-83AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335041.10.0uncharacterized protein LOC113849369 isoform X3
RefseqXP_027335042.10.0uncharacterized protein LOC113849369 isoform X4
TrEMBLA0A2Z6NGL20.0A0A2Z6NGL2_TRISU; Uncharacterized protein
STRINGAET017290.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-82TRF-like 6